[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #683
jenkins at imagej.net
jenkins at imagej.net
Tue Jan 14 11:02:04 CST 2014
See <http://jenkins.imagej.net/job/Fiji-Maven/683/changes>
Changes:
[Curtis Rueden] GenericDialogPlus: organize imports
[Curtis Rueden] GenericDialogPlus: skip UI calls when headless
[Curtis Rueden] Move GenericDialogPlus main method to src/test
[Curtis Rueden] GenericDialogPlus: fix warnings
------------------------------------------
[...truncated 8643 lines...]
[INFO] Dependency xml-apis-1.3.04.jar is already there; skipping
[INFO] Dependency itext-2.1.5.jar is already there; skipping
[INFO] Dependency bcmail-jdk14-138.jar is already there; skipping
[INFO] Dependency bcprov-jdk14-138.jar is already there; skipping
[INFO] Dependency mpicbg-0.6.1-SNAPSHOT.jar is already there; skipping
[INFO] Dependency weka-dev-3.7.6.jar is already there; skipping
[INFO] Dependency java-cup-0.11a.jar is already there; skipping
[INFO] Dependency pentaho-package-manager-1.0.0.jar is already there; skipping
[INFO] Dependency 3D_Viewer-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency Fiji_Plugins-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency ij-core-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-commands-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-data-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency scifio-0.8.1.jar is already there; skipping
[INFO] Dependency jai_imageio-1.0.1.jar is already there; skipping
[INFO] Dependency mapdb-0.9.7.jar is already there; skipping
[INFO] Dependency ij-options-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-tools-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-ui-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-updater-core-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency imglib2-ops-2.0.0-beta-22.jar is already there; skipping
[INFO] Dependency object-inspector-0.1.jar is already there; skipping
[INFO] Dependency base64-2.3.8.jar is already there; skipping
[INFO] Copying SPIM_Opener-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency scifio-4.4.9.jar is already there; skipping
[INFO] Dependency jai_imageio-4.4.9.jar is already there; skipping
[INFO] Dependency lwf-stubs-4.4.9.jar is already there; skipping
[INFO] Dependency forms-1.2.1.jar is already there; skipping
[INFO] Dependency slf4j-api-1.7.2.jar is already there; skipping
[INFO] Dependency serializer-2.7.1.jar is already there; skipping
[INFO] Dependency xalan-2.7.1.jar is already there; skipping
[INFO] Dependency jna-3.2.7.jar is already there; skipping
[INFO] Dependency imglib2-algorithms-2.0.0-beta-22.jar is already there; skipping
[INFO] Dependency imglib2-ij-2.0.0-beta-22.jar is already there; skipping
[INFO] Dependency imglib2-2.0.0-beta-22.jar is already there; skipping
[INFO] Dependency Stitching_-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency mines-jtk-20100113.jar is already there; skipping
[INFO] Dependency loci-common-4.4.9.jar is already there; skipping
[INFO] Dependency loci_plugins-4.4.9.jar is already there; skipping
[INFO] Dependency bio-formats-4.4.9.jar is already there; skipping
[INFO] Dependency mdbtools-java-4.4.9.jar is already there; skipping
[INFO] Dependency metakit-4.4.9.jar is already there; skipping
[INFO] Dependency poi-loci-4.4.9.jar is already there; skipping
[INFO] Dependency commons-logging-1.1.1.jar is already there; skipping
[INFO] Dependency netcdf-4.0.03.jar is already there; skipping
[INFO] Dependency log4j-1.2.17.jar is already there; skipping
[INFO] Dependency ome-xml-4.4.9.jar is already there; skipping
[INFO] Copying TrackMate_-2.1.1-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency scijava-common-2.7.0.jar is already there; skipping
[INFO] Dependency eventbus-1.4.jar is already there; skipping
[INFO] Dependency fiji-compat-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency javassist-3.16.1-GA.jar is already there; skipping
[INFO] Dependency ij-legacy-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-util-awt-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-app-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-scripting-beanshell-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency bsh-2.0b4.jar is already there; skipping
[INFO] Dependency ij-scripting-clojure-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency clojure-1.3.0.jar is already there; skipping
[INFO] Dependency ij-scripting-java-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-minimaven-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-scripting-javascript-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-scripting-jruby-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency jruby-1.6.7.2.jar is already there; skipping
[INFO] Dependency ij-scripting-jython-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency jython-2.5.2.jar is already there; skipping
[INFO] Dependency ij-platforms-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-text-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency commons-lang3-3.1.jar is already there; skipping
[INFO] Dependency markdownj-0.3.0-1.0.2b4.jar is already there; skipping
[INFO] Dependency ij-updater-ssh-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency jsch-0.1.49.jar is already there; skipping
[INFO] Dependency ij-updater-webdav-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-ui-swing-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-ui-common-awt-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-util-swing-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency miglayout-3.7.3.1-swing.jar is already there; skipping
[INFO] Dependency jdatepicker-1.3.2.jar is already there; skipping
[INFO] Dependency jhotdraw-7.6.0.jar is already there; skipping
[INFO] Dependency ij-ui-swing-commands-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-ui-swing-script-editor-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency rsyntaxtextarea-2.0.4.1.jar is already there; skipping
[INFO] Dependency ij-ui-swing-tools-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-ui-swing-updater-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency slf4j-log4j12-1.7.2.jar is already there; skipping
[INFO] Dependency batik-1.8.jar is already there; skipping
[INFO] Dependency itextpdf-5.1.1.jar is already there; skipping
[INFO] Copying jdom-2.0.2.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying jgrapht-0.8.3.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying jgraphx-1.10.4.1.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying imglib2-algorithms-gpl-2.0.0-beta-22.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Dependency imglib2-meta-2.0.0-beta-22.jar is already there; skipping
[INFO] Dependency udunits-4.3.18.jar is already there; skipping
[INFO] Copying imglib2-algorithms-legacy-2.0.0-beta-22.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying imglib2-realtransform-2.0.0-beta-22.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] ------------------------------------------------------------------------
[INFO] Building Aggregator project for the Fiji submodules
[INFO] task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/modules/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/pom-fiji-submodules/2.0.0-SNAPSHOT/pom-fiji-submodules-2.0.0-SNAPSHOT.pom
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[WARNING] *** CHECKSUM FAILED - Checksum failed on download: local = '82ef5db24ae2974a0fe85324cb1aef784e8d64e3'; remote = '7e5d3f7b38851d930f72cefae630f1540a03562e' - RETRYING
[WARNING] *** CHECKSUM FAILED - Checksum failed on download: local = '82ef5db24ae2974a0fe85324cb1aef784e8d64e3'; remote = '7e5d3f7b38851d930f72cefae630f1540a03562e' - IGNORING
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO]
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] ------------------------------------------------------------------------
[INFO] Aggregator project for the Fiji project ............... SUCCESS [4.353s]
[INFO] Aggregator project for the Fiji plugins ............... SUCCESS [0.088s]
[INFO] jars/fiji-lib.jar ..................................... SUCCESS [2.618s]
[INFO] jars/pal-optimization.jar ............................. SUCCESS [1.076s]
[INFO] jars/VIB-lib.jar ...................................... SUCCESS [5.191s]
[INFO] Legacy ImgLib1 ........................................ SUCCESS [6.812s]
[INFO] plugins/3D_Viewer.jar ................................. SUCCESS [4.792s]
[INFO] plugins/level_sets.jar ................................ SUCCESS [1.346s]
[INFO] plugins/3D_Blob_Segmentation.jar ...................... SUCCESS [1.013s]
[INFO] plugins/3D_Objects_Counter.jar ........................ SUCCESS [0.872s]
[INFO] plugins/AnalyzeSkeleton_.jar .......................... SUCCESS [1.033s]
[INFO] plugins/Analyze_Reader_Writer.jar ..................... SUCCESS [0.672s]
[INFO] plugins/Anisotropic_Diffusion_2D.jar .................. SUCCESS [0.695s]
[INFO] plugins/Fiji_Archipelago.jar .......................... SUCCESS [2.139s]
[INFO] jars/imagescience.jar ................................. SUCCESS [2.542s]
[INFO] plugins/Trainable_Segmentation.jar .................... SUCCESS [4.610s]
[INFO] plugins/Archipelago_Plugins.jar ....................... SUCCESS [2.700s]
[INFO] plugins/Arrow_.jar .................................... SUCCESS [0.903s]
[INFO] plugins/Auto_Threshold.jar ............................ SUCCESS [0.944s]
[INFO] plugins/BalloonSegmentation_.jar ...................... SUCCESS [1.389s]
[INFO] jars/fiji-compat.jar .................................. SUCCESS [6.734s]
[INFO] jars/fiji-scripting.jar ............................... SUCCESS [1.481s]
[INFO] plugins/BeanShell_Interpreter.jar ..................... SUCCESS [1.017s]
[INFO] plugins/Bug_Submitter.jar ............................. SUCCESS [0.954s]
[INFO] plugins/CLI_.jar ...................................... SUCCESS [1.527s]
[INFO] plugins/CPU_Meter.jar ................................. SUCCESS [0.627s]
[INFO] plugins/Calculator_Plus.jar ........................... SUCCESS [0.656s]
[INFO] plugins/Clojure_Interpreter.jar ....................... SUCCESS [1.368s]
[INFO] plugins/Colocalisation_Analysis.jar ................... SUCCESS [2.865s]
[INFO] plugins/Color_Histogram.jar ........................... SUCCESS [0.805s]
[INFO] plugins/Color_Inspector_3D.jar ........................ SUCCESS [1.605s]
[INFO] plugins/Colour_Deconvolution.jar ...................... SUCCESS [0.761s]
[INFO] plugins/CorrectBleach_.jar ............................ SUCCESS [0.752s]
[INFO] plugins/Fiji_Plugins.jar .............................. SUCCESS [1.750s]
[INFO] plugins/Descriptor_based_registration.jar ............. SUCCESS [2.244s]
[INFO] plugins/Dichromacy_.jar ............................... SUCCESS [0.628s]
[INFO] plugins/Differentials_.jar ............................ SUCCESS [0.735s]
[INFO] plugins/Directionality_.jar ........................... SUCCESS [0.949s]
[INFO] jars/imageware.jar .................................... SUCCESS [4.586s]
[INFO] jars/wavelets.jar ..................................... SUCCESS [0.848s]
[INFO] plugins/Extended_Depth_Field.jar ...................... SUCCESS [1.784s]
[INFO] plugins/FS_Align_TrakEM2.jar .......................... SUCCESS [6.127s]
[INFO] plugins/FeatureJ_.jar ................................. SUCCESS [0.954s]
[INFO] plugins/Feature_Detection.jar ......................... SUCCESS [1.004s]
[INFO] jars/fake.jar ......................................... SUCCESS [1.688s]
[INFO] plugins/JRuby_Interpreter.jar ......................... SUCCESS [1.311s]
[INFO] plugins/Javascript_.jar ............................... SUCCESS [1.039s]
[INFO] plugins/Jython_Interpreter.jar ........................ SUCCESS [1.202s]
[INFO] plugins/Refresh_Javas.jar ............................. SUCCESS [1.224s]
[INFO] plugins/Script_Editor.jar ............................. SUCCESS [3.015s]
[INFO] plugins/Fiji_Developer.jar ............................ SUCCESS [1.933s]
[INFO] plugins/Fiji_Package_Maker.jar ........................ SUCCESS [0.866s]
[INFO] plugins/Fiji_Updater.jar .............................. SUCCESS [0.773s]
[INFO] plugins/FlowJ_.jar .................................... SUCCESS [3.080s]
[INFO] plugins/Graph_Cut.jar ................................. SUCCESS [1.320s]
[INFO] plugins/Gray_Morphology.jar ........................... SUCCESS [0.900s]
[INFO] plugins/Helmholtz_Analysis.jar ........................ SUCCESS [0.636s]
[INFO] plugins/IJ_Robot.jar .................................. SUCCESS [0.619s]
[INFO] plugins/IO_.jar ....................................... SUCCESS [3.937s]
[INFO] plugins/Image_Expression_Parser.jar ................... SUCCESS [3.038s]
[INFO] plugins/Interactive_3D_Surface_Plot.jar ............... SUCCESS [1.437s]
[INFO] plugins/IsoData_Classifier.jar ........................ SUCCESS [0.603s]
[INFO] plugins/Kuwahara_Filter.jar ........................... SUCCESS [0.607s]
[INFO] plugins/Lasso_and_Blow_Tool.jar ....................... SUCCESS [0.752s]
[INFO] plugins/Linear_Kuwahara.jar ........................... SUCCESS [0.633s]
[INFO] plugins/LocalThickness_.jar ........................... SUCCESS [0.802s]
[INFO] plugins/MTrack2_.jar .................................. SUCCESS [0.757s]
[INFO] plugins/MTrackJ_.jar .................................. SUCCESS [1.639s]
[INFO] plugins/M_I_P.jar ..................................... SUCCESS [0.807s]
[INFO] plugins/Manual_Tracking.jar ........................... SUCCESS [1.115s]
[INFO] plugins/MosaicJ_.jar .................................. SUCCESS [1.485s]
[INFO] plugins/Multi_Kymograph.jar ........................... SUCCESS [1.335s]
[INFO] plugins/PIV_analyser.jar .............................. SUCCESS [0.785s]
[INFO] plugins/PointPicker_.jar .............................. SUCCESS [1.007s]
[INFO] plugins/QuickPALM_.jar ................................ SUCCESS [1.071s]
[INFO] plugins/RATS_.jar ..................................... SUCCESS [0.795s]
[INFO] plugins/RandomJ_.jar .................................. SUCCESS [2.436s]
[INFO] plugins/Reconstruct_Reader.jar ........................ SUCCESS [2.421s]
[INFO] plugins/SPIM_Opener.jar ............................... SUCCESS [1.015s]
[INFO] plugins/Samples_.jar .................................. SUCCESS [0.225s]
[INFO] plugins/Scala_Interpreter.jar ......................... SUCCESS [1.504s]
[INFO] plugins/Series_Labeler.jar ............................ SUCCESS [0.902s]
[INFO] plugins/SheppLogan_.jar ............................... SUCCESS [0.632s]
[INFO] plugins/Skeletonize3D_.jar ............................ SUCCESS [0.679s]
[INFO] plugins/VIB_.jar ...................................... SUCCESS [3.367s]
[INFO] plugins/Simple_Neurite_Tracer.jar ..................... SUCCESS [3.507s]
[INFO] plugins/Siox_Segmentation.jar ......................... SUCCESS [1.535s]
[INFO] plugins/Snakuscule_.jar ............................... SUCCESS [1.125s]
[INFO] plugins/SplineDeformationGenerator_.jar ............... SUCCESS [1.041s]
[INFO] plugins/StackReg_.jar ................................. SUCCESS [1.006s]
[INFO] plugins/Stack_Manipulation.jar ........................ SUCCESS [1.055s]
[INFO] plugins/Statistical_Region_Merging.jar ................ SUCCESS [1.346s]
[INFO] plugins/Sync_Win.jar .................................. SUCCESS [1.174s]
[INFO] plugins/Thread_Killer.jar ............................. SUCCESS [0.607s]
[INFO] plugins/Threshold_Colour.jar .......................... SUCCESS [0.895s]
[INFO] plugins/Time_Stamper.jar .............................. SUCCESS [0.620s]
[INFO] plugins/ToAST_.jar .................................... SUCCESS [2.630s]
[INFO] plugins/TopoJ_.jar .................................... SUCCESS [0.707s]
[INFO] plugins/TransformJ_.jar ............................... SUCCESS [1.014s]
[INFO] plugins/TurboReg_.jar ................................. SUCCESS [1.507s]
[INFO] plugins/UnwarpJ_.jar .................................. SUCCESS [1.627s]
[INFO] jars/Updater_Fix.jar .................................. SUCCESS [0.957s]
[INFO] plugins/Vaa3d_Reader.jar .............................. SUCCESS [0.763s]
[INFO] plugins/Video_Editing.jar ............................. SUCCESS [0.779s]
[INFO] plugins/View5D_.jar ................................... SUCCESS [1.966s]
[INFO] plugins/Volume_Calculator.jar ......................... SUCCESS [1.173s]
[INFO] plugins/Volume_Viewer.jar ............................. SUCCESS [1.791s]
[INFO] plugins/bUnwarpJ_.jar ................................. SUCCESS [2.154s]
[INFO] plugins/blockmatching_.jar ............................ SUCCESS [2.099s]
[INFO] jars/mij.jar .......................................... SUCCESS [0.816s]
[INFO] plugins/panorama_.jar ................................. SUCCESS [1.180s]
[INFO] plugins/register_virtual_stack_slices.jar ............. SUCCESS [2.108s]
[INFO] plugins/registration_3d.jar ........................... SUCCESS [1.705s]
[INFO] jars/weave_jy2java.jar ................................ SUCCESS [1.358s]
[INFO] Aggregator project for the external Fiji plugins ...... SUCCESS [0.771s]
[INFO] Aggregator project for the Fiji submodules ............ SUCCESS [0.068s]
[INFO] ------------------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3 minutes 14 seconds
[INFO] Finished at: Tue Jan 14 11:02:04 CST 2014
[INFO] Final Memory: 180M/439M
[INFO] ------------------------------------------------------------------------
Copied 2 artifacts from "SciJava-scripts" build number 2
[workspace] $ /bin/sh -xe /tmp/hudson4271737455022672858.sh
+ sh bin/incremental-deploy.sh
sh: 0: Can't open bin/incremental-deploy.sh
Build step 'Exécuter un script shell' marked build as failure
More information about the ImageJ-builds
mailing list