[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #682

Tue Jan 14 10:58:32 CST 2014

See <http://jenkins.imagej.net/job/Fiji-Maven/682/changes>

Changes:

[Johannes Schindelin] Build.sh: maven-helper moved to scijava-scripts

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[...truncated 8644 lines...]
[INFO] Dependency xml-apis-1.3.04.jar is already there; skipping
[INFO] Dependency itext-2.1.5.jar is already there; skipping
[INFO] Dependency bcmail-jdk14-138.jar is already there; skipping
[INFO] Dependency bcprov-jdk14-138.jar is already there; skipping
[INFO] Dependency mpicbg-0.6.1-SNAPSHOT.jar is already there; skipping
[INFO] Dependency weka-dev-3.7.6.jar is already there; skipping
[INFO] Dependency java-cup-0.11a.jar is already there; skipping
[INFO] Dependency pentaho-package-manager-1.0.0.jar is already there; skipping
[INFO] Dependency 3D_Viewer-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency Fiji_Plugins-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency ij-core-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-commands-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-data-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency scifio-0.8.1.jar is already there; skipping
[INFO] Dependency jai_imageio-1.0.1.jar is already there; skipping
[INFO] Dependency mapdb-0.9.7.jar is already there; skipping
[INFO] Dependency ij-options-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-tools-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-ui-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-updater-core-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency imglib2-ops-2.0.0-beta-22.jar is already there; skipping
[INFO] Dependency object-inspector-0.1.jar is already there; skipping
[INFO] Dependency base64-2.3.8.jar is already there; skipping
[INFO] Copying SPIM_Opener-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency scifio-4.4.9.jar is already there; skipping
[INFO] Dependency jai_imageio-4.4.9.jar is already there; skipping
[INFO] Dependency lwf-stubs-4.4.9.jar is already there; skipping
[INFO] Dependency forms-1.2.1.jar is already there; skipping
[INFO] Dependency slf4j-api-1.7.2.jar is already there; skipping
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[INFO] Dependency xalan-2.7.1.jar is already there; skipping
[INFO] Dependency jna-3.2.7.jar is already there; skipping
[INFO] Dependency imglib2-algorithms-2.0.0-beta-22.jar is already there; skipping
[INFO] Dependency imglib2-ij-2.0.0-beta-22.jar is already there; skipping
[INFO] Dependency imglib2-2.0.0-beta-22.jar is already there; skipping
[INFO] Dependency Stitching_-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency mines-jtk-20100113.jar is already there; skipping
[INFO] Dependency loci-common-4.4.9.jar is already there; skipping
[INFO] Dependency loci_plugins-4.4.9.jar is already there; skipping
[INFO] Dependency bio-formats-4.4.9.jar is already there; skipping
[INFO] Dependency mdbtools-java-4.4.9.jar is already there; skipping
[INFO] Dependency metakit-4.4.9.jar is already there; skipping
[INFO] Dependency poi-loci-4.4.9.jar is already there; skipping
[INFO] Dependency commons-logging-1.1.1.jar is already there; skipping
[INFO] Dependency netcdf-4.0.03.jar is already there; skipping
[INFO] Dependency log4j-1.2.17.jar is already there; skipping
[INFO] Dependency ome-xml-4.4.9.jar is already there; skipping
[INFO] Copying TrackMate_-2.1.1-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency scijava-common-2.7.0.jar is already there; skipping
[INFO] Dependency eventbus-1.4.jar is already there; skipping
[INFO] Dependency fiji-compat-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency javassist-3.16.1-GA.jar is already there; skipping
[INFO] Dependency ij-legacy-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-util-awt-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-app-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-scripting-beanshell-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency bsh-2.0b4.jar is already there; skipping
[INFO] Dependency ij-scripting-clojure-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency clojure-1.3.0.jar is already there; skipping
[INFO] Dependency ij-scripting-java-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-minimaven-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-scripting-javascript-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-scripting-jruby-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency jruby-1.6.7.2.jar is already there; skipping
[INFO] Dependency ij-scripting-jython-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency jython-2.5.2.jar is already there; skipping
[INFO] Dependency ij-platforms-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-text-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency commons-lang3-3.1.jar is already there; skipping
[INFO] Dependency markdownj-0.3.0-1.0.2b4.jar is already there; skipping
[INFO] Dependency ij-updater-ssh-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency jsch-0.1.49.jar is already there; skipping
[INFO] Dependency ij-updater-webdav-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-ui-swing-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-ui-common-awt-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-util-swing-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency miglayout-3.7.3.1-swing.jar is already there; skipping
[INFO] Dependency jdatepicker-1.3.2.jar is already there; skipping
[INFO] Dependency jhotdraw-7.6.0.jar is already there; skipping
[INFO] Dependency ij-ui-swing-commands-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-ui-swing-script-editor-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency rsyntaxtextarea-2.0.4.1.jar is already there; skipping
[INFO] Dependency ij-ui-swing-tools-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency ij-ui-swing-updater-2.0.0-beta-7.6.jar is already there; skipping
[INFO] Dependency slf4j-log4j12-1.7.2.jar is already there; skipping
[INFO] Dependency batik-1.8.jar is already there; skipping
[INFO] Dependency itextpdf-5.1.1.jar is already there; skipping
[INFO] Copying jdom-2.0.2.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying jgrapht-0.8.3.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying jgraphx-1.10.4.1.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying imglib2-algorithms-gpl-2.0.0-beta-22.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Dependency imglib2-meta-2.0.0-beta-22.jar is already there; skipping
[INFO] Dependency udunits-4.3.18.jar is already there; skipping
[INFO] Copying imglib2-algorithms-legacy-2.0.0-beta-22.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying imglib2-realtransform-2.0.0-beta-22.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] ------------------------------------------------------------------------
[INFO] Building Aggregator project for the Fiji submodules
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/modules/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/pom-fiji-submodules/2.0.0-SNAPSHOT/pom-fiji-submodules-2.0.0-SNAPSHOT.pom
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[WARNING] *** CHECKSUM FAILED - Checksum failed on download: local = '82ef5db24ae2974a0fe85324cb1aef784e8d64e3'; remote = '7e5d3f7b38851d930f72cefae630f1540a03562e' - RETRYING
[WARNING] *** CHECKSUM FAILED - Checksum failed on download: local = '82ef5db24ae2974a0fe85324cb1aef784e8d64e3'; remote = '7e5d3f7b38851d930f72cefae630f1540a03562e' - IGNORING
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] 
[INFO] 
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] ------------------------------------------------------------------------
[INFO] Aggregator project for the Fiji project ............... SUCCESS [4.363s]
[INFO] Aggregator project for the Fiji plugins ............... SUCCESS [0.102s]
[INFO] jars/fiji-lib.jar ..................................... SUCCESS [2.233s]
[INFO] jars/pal-optimization.jar ............................. SUCCESS [1.082s]
[INFO] jars/VIB-lib.jar ...................................... SUCCESS [5.281s]
[INFO] Legacy ImgLib1 ........................................ SUCCESS [7.925s]
[INFO] plugins/3D_Viewer.jar ................................. SUCCESS [4.772s]
[INFO] plugins/level_sets.jar ................................ SUCCESS [1.409s]
[INFO] plugins/3D_Blob_Segmentation.jar ...................... SUCCESS [1.109s]
[INFO] plugins/3D_Objects_Counter.jar ........................ SUCCESS [0.898s]
[INFO] plugins/AnalyzeSkeleton_.jar .......................... SUCCESS [1.069s]
[INFO] plugins/Analyze_Reader_Writer.jar ..................... SUCCESS [0.762s]
[INFO] plugins/Anisotropic_Diffusion_2D.jar .................. SUCCESS [0.722s]
[INFO] plugins/Fiji_Archipelago.jar .......................... SUCCESS [2.295s]
[INFO] jars/imagescience.jar ................................. SUCCESS [2.602s]
[INFO] plugins/Trainable_Segmentation.jar .................... SUCCESS [4.737s]
[INFO] plugins/Archipelago_Plugins.jar ....................... SUCCESS [2.692s]
[INFO] plugins/Arrow_.jar .................................... SUCCESS [0.957s]
[INFO] plugins/Auto_Threshold.jar ............................ SUCCESS [1.829s]
[INFO] plugins/BalloonSegmentation_.jar ...................... SUCCESS [1.611s]
[INFO] jars/fiji-compat.jar .................................. SUCCESS [6.816s]
[INFO] jars/fiji-scripting.jar ............................... SUCCESS [1.491s]
[INFO] plugins/BeanShell_Interpreter.jar ..................... SUCCESS [1.034s]
[INFO] plugins/Bug_Submitter.jar ............................. SUCCESS [0.923s]
[INFO] plugins/CLI_.jar ...................................... SUCCESS [1.511s]
[INFO] plugins/CPU_Meter.jar ................................. SUCCESS [0.688s]
[INFO] plugins/Calculator_Plus.jar ........................... SUCCESS [0.746s]
[INFO] plugins/Clojure_Interpreter.jar ....................... SUCCESS [1.373s]
[INFO] plugins/Colocalisation_Analysis.jar ................... SUCCESS [3.010s]
[INFO] plugins/Color_Histogram.jar ........................... SUCCESS [0.840s]
[INFO] plugins/Color_Inspector_3D.jar ........................ SUCCESS [1.643s]
[INFO] plugins/Colour_Deconvolution.jar ...................... SUCCESS [0.804s]
[INFO] plugins/CorrectBleach_.jar ............................ SUCCESS [0.810s]
[INFO] plugins/Fiji_Plugins.jar .............................. SUCCESS [1.759s]
[INFO] plugins/Descriptor_based_registration.jar ............. SUCCESS [2.722s]
[INFO] plugins/Dichromacy_.jar ............................... SUCCESS [0.759s]
[INFO] plugins/Differentials_.jar ............................ SUCCESS [0.802s]
[INFO] plugins/Directionality_.jar ........................... SUCCESS [1.030s]
[INFO] jars/imageware.jar .................................... SUCCESS [2.890s]
[INFO] jars/wavelets.jar ..................................... SUCCESS [2.506s]
[INFO] plugins/Extended_Depth_Field.jar ...................... SUCCESS [2.051s]
[INFO] plugins/FS_Align_TrakEM2.jar .......................... SUCCESS [4.525s]
[INFO] plugins/FeatureJ_.jar ................................. SUCCESS [0.964s]
[INFO] plugins/Feature_Detection.jar ......................... SUCCESS [0.995s]
[INFO] jars/fake.jar ......................................... SUCCESS [1.620s]
[INFO] plugins/JRuby_Interpreter.jar ......................... SUCCESS [1.254s]
[INFO] plugins/Javascript_.jar ............................... SUCCESS [1.087s]
[INFO] plugins/Jython_Interpreter.jar ........................ SUCCESS [1.205s]
[INFO] plugins/Refresh_Javas.jar ............................. SUCCESS [1.278s]
[INFO] plugins/Script_Editor.jar ............................. SUCCESS [2.984s]
[INFO] plugins/Fiji_Developer.jar ............................ SUCCESS [1.967s]
[INFO] plugins/Fiji_Package_Maker.jar ........................ SUCCESS [1.063s]
[INFO] plugins/Fiji_Updater.jar .............................. SUCCESS [0.808s]
[INFO] plugins/FlowJ_.jar .................................... SUCCESS [3.140s]
[INFO] plugins/Graph_Cut.jar ................................. SUCCESS [1.410s]
[INFO] plugins/Gray_Morphology.jar ........................... SUCCESS [0.973s]
[INFO] plugins/Helmholtz_Analysis.jar ........................ SUCCESS [0.735s]
[INFO] plugins/IJ_Robot.jar .................................. SUCCESS [0.667s]
[INFO] plugins/IO_.jar ....................................... SUCCESS [2.373s]
[INFO] plugins/Image_Expression_Parser.jar ................... SUCCESS [5.414s]
[INFO] plugins/Interactive_3D_Surface_Plot.jar ............... SUCCESS [1.798s]
[INFO] plugins/IsoData_Classifier.jar ........................ SUCCESS [0.700s]
[INFO] plugins/Kuwahara_Filter.jar ........................... SUCCESS [0.701s]
[INFO] plugins/Lasso_and_Blow_Tool.jar ....................... SUCCESS [0.808s]
[INFO] plugins/Linear_Kuwahara.jar ........................... SUCCESS [0.702s]
[INFO] plugins/LocalThickness_.jar ........................... SUCCESS [0.879s]
[INFO] plugins/MTrack2_.jar .................................. SUCCESS [0.782s]
[INFO] plugins/MTrackJ_.jar .................................. SUCCESS [1.688s]
[INFO] plugins/M_I_P.jar ..................................... SUCCESS [0.835s]
[INFO] plugins/Manual_Tracking.jar ........................... SUCCESS [1.100s]
[INFO] plugins/MosaicJ_.jar .................................. SUCCESS [1.589s]
[INFO] plugins/Multi_Kymograph.jar ........................... SUCCESS [0.745s]
[INFO] plugins/PIV_analyser.jar .............................. SUCCESS [0.797s]
[INFO] plugins/PointPicker_.jar .............................. SUCCESS [1.071s]
[INFO] plugins/QuickPALM_.jar ................................ SUCCESS [1.732s]
[INFO] plugins/RATS_.jar ..................................... SUCCESS [0.884s]
[INFO] plugins/RandomJ_.jar .................................. SUCCESS [0.850s]
[INFO] plugins/Reconstruct_Reader.jar ........................ SUCCESS [2.753s]
[INFO] plugins/SPIM_Opener.jar ............................... SUCCESS [1.014s]
[INFO] plugins/Samples_.jar .................................. SUCCESS [0.262s]
[INFO] plugins/Scala_Interpreter.jar ......................... SUCCESS [3.283s]
[INFO] plugins/Series_Labeler.jar ............................ SUCCESS [0.965s]
[INFO] plugins/SheppLogan_.jar ............................... SUCCESS [0.660s]
[INFO] plugins/Skeletonize3D_.jar ............................ SUCCESS [0.685s]
[INFO] plugins/VIB_.jar ...................................... SUCCESS [3.763s]
[INFO] plugins/Simple_Neurite_Tracer.jar ..................... SUCCESS [3.424s]
[INFO] plugins/Siox_Segmentation.jar ......................... SUCCESS [1.582s]
[INFO] plugins/Snakuscule_.jar ............................... SUCCESS [1.138s]
[INFO] plugins/SplineDeformationGenerator_.jar ............... SUCCESS [1.046s]
[INFO] plugins/StackReg_.jar ................................. SUCCESS [1.043s]
[INFO] plugins/Stack_Manipulation.jar ........................ SUCCESS [1.035s]
[INFO] plugins/Statistical_Region_Merging.jar ................ SUCCESS [0.717s]
[INFO] plugins/Sync_Win.jar .................................. SUCCESS [1.256s]
[INFO] plugins/Thread_Killer.jar ............................. SUCCESS [0.746s]
[INFO] plugins/Threshold_Colour.jar .......................... SUCCESS [0.942s]
[INFO] plugins/Time_Stamper.jar .............................. SUCCESS [1.345s]
[INFO] plugins/ToAST_.jar .................................... SUCCESS [1.043s]
[INFO] plugins/TopoJ_.jar .................................... SUCCESS [0.750s]
[INFO] plugins/TransformJ_.jar ............................... SUCCESS [1.043s]
[INFO] plugins/TurboReg_.jar ................................. SUCCESS [1.576s]
[INFO] plugins/UnwarpJ_.jar .................................. SUCCESS [3.305s]
[INFO] jars/Updater_Fix.jar .................................. SUCCESS [0.652s]
[INFO] plugins/Vaa3d_Reader.jar .............................. SUCCESS [0.829s]
[INFO] plugins/Video_Editing.jar ............................. SUCCESS [0.877s]
[INFO] plugins/View5D_.jar ................................... SUCCESS [1.972s]
[INFO] plugins/Volume_Calculator.jar ......................... SUCCESS [1.208s]
[INFO] plugins/Volume_Viewer.jar ............................. SUCCESS [1.694s]
[INFO] plugins/bUnwarpJ_.jar ................................. SUCCESS [2.117s]
[INFO] plugins/blockmatching_.jar ............................ SUCCESS [1.901s]
[INFO] jars/mij.jar .......................................... SUCCESS [0.807s]
[INFO] plugins/panorama_.jar ................................. SUCCESS [1.305s]
[INFO] plugins/register_virtual_stack_slices.jar ............. SUCCESS [2.060s]
[INFO] plugins/registration_3d.jar ........................... SUCCESS [1.068s]
[INFO] jars/weave_jy2java.jar ................................ SUCCESS [1.440s]
[INFO] Aggregator project for the external Fiji plugins ...... SUCCESS [0.979s]
[INFO] Aggregator project for the Fiji submodules ............ SUCCESS [0.099s]
[INFO] ------------------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3 minutes 20 seconds
[INFO] Finished at: Tue Jan 14 10:58:31 CST 2014
[INFO] Final Memory: 150M/414M
[INFO] ------------------------------------------------------------------------
Copied 2 artifacts from "SciJava-scripts" build number 2
[workspace] $ /bin/sh -xe /tmp/hudson3729978900129044051.sh
+ sh bin/incremental-deploy.sh
sh: 0: Can't open bin/incremental-deploy.sh
Build step 'Exécuter un script shell' marked build as failure