[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #521
jenkins at imagej.net
jenkins at imagej.net
Wed Jul 24 16:16:30 CDT 2013
See <http://jenkins.imagej.net/job/Fiji-Maven/521/changes>
Changes:
[Jenkins] Bump to pom-scijava 1.58
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[...truncated 128 lines...]
[INFO] plugins/Siox_Segmentation.jar
[INFO] plugins/Snakuscule_.jar
[INFO] plugins/SplineDeformationGenerator_.jar
[INFO] plugins/StackReg_.jar
[INFO] plugins/Stack_Manipulation.jar
[INFO] plugins/Statistical_Region_Merging.jar
[INFO] plugins/Sync_Win.jar
[INFO] plugins/Thread_Killer.jar
[INFO] plugins/Threshold_Colour.jar
[INFO] plugins/Time_Stamper.jar
[INFO] plugins/ToAST_.jar
[INFO] plugins/TopoJ_.jar
[INFO] plugins/TrackMate_.jar
[INFO] plugins/Trainable_Segmentation.jar
[INFO] plugins/TransformJ_.jar
[INFO] plugins/TurboReg_.jar
[INFO] plugins/UnwarpJ_.jar
[INFO] jars/Updater_Fix.jar
[INFO] plugins/Vaa3d_Reader.jar
[INFO] plugins/Video_Editing.jar
[INFO] plugins/View5D_.jar
[INFO] plugins/Volume_Calculator.jar
[INFO] plugins/Volume_Viewer.jar
[INFO] plugins/bUnwarpJ_.jar
[INFO] plugins/blockmatching_.jar
[INFO] jars/mij.jar
[INFO] plugins/panorama_.jar
[INFO] plugins/register_virtual_stack_slices.jar
[INFO] plugins/registration_3d.jar
[INFO] jars/weave_jy2java.jar
[INFO] Aggregator project for the Fiji submodules
[INFO] ------------------------------------------------------------------------
[INFO] Building Aggregator project for the Fiji project
[INFO] task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from mvnplugins.fusesource.org
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] [buildnumber:create {execution: default}]
[INFO] Checking for local modifications: skipped.
[INFO] Updating project files from SCM: skipped.
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace
[INFO] Storing buildNumber: cfd4d802da700a4c54ef08e7c48b51e30c94856d at timestamp: 1374700579786
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] Setting rootdir: /data/devel/jenkins/jobs/Fiji-Maven/workspace
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/pom-fiji/2.0.0-SNAPSHOT/pom-fiji-2.0.0-SNAPSHOT.pom
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pom-fiji:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pom-fiji:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:pom-fiji:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] ------------------------------------------------------------------------
[INFO] Building Aggregator project for the Fiji plugins
[INFO] task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/pom-fiji-plugins/2.0.0-SNAPSHOT/pom-fiji-plugins-2.0.0-SNAPSHOT.pom
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pom-fiji-plugins:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pom-fiji-plugins:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:pom-fiji-plugins:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] ------------------------------------------------------------------------
[INFO] Building jars/fiji-lib.jar
[INFO] task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 27 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/surefire-reports
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T E S T S
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Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/fiji-lib/2.0.0-SNAPSHOT/fiji-lib-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/fiji-lib/2.0.0-SNAPSHOT/fiji-lib-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:fiji-lib:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:fiji-lib:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:fiji-lib:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying fiji-lib-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying ij-1.48a.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] ------------------------------------------------------------------------
[INFO] Building jars/pal-optimization.jar
[INFO] task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/src/main/resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 22 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/pal-optimization/2.0.0-SNAPSHOT/pal-optimization-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/pal-optimization/2.0.0-SNAPSHOT/pal-optimization-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pal-optimization:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pal-optimization:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:pal-optimization:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying pal-optimization-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] ------------------------------------------------------------------------
[INFO] Building jars/VIB-lib.jar
[INFO] task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 30 resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 180 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] Compiling 10 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/test-classes
[INFO] [surefire:test {execution: default-test}]
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running distance.TestEuclidean
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.031 sec
Running distance.TestCorrelation
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec
Running distance.TestMutualInformation
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 sec
Running math3d.TestEigenvalueDecompositions
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.479 sec
Running vib.TestRigidRegistration
Tests run: 6, Failures: 0, Errors: 6, Skipped: 0, Time elapsed: 0.023 sec <<< FAILURE!
Running vib.TestFastMatrix
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec
Running util.TestPenalty
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec
Running util.TestFindConnectedRegions
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.078 sec
Running landmarks.TestLoading
Tests run: 3, Failures: 3, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec <<< FAILURE!
Results :
Failed tests: testLoadingXML(landmarks.TestLoading)
testLoadingTSV(landmarks.TestLoading)
testLoadingPseudoYAML(landmarks.TestLoading)
Tests in error:
testRegistration8BitGray(vib.TestRigidRegistration): (..)
testRegistration8BitGray(vib.TestRigidRegistration)
testRegistrationMaterials(vib.TestRigidRegistration): (..)
testRegistrationMaterials(vib.TestRigidRegistration)
testRegistration12BitGray(vib.TestRigidRegistration): (..)
testRegistration12BitGray(vib.TestRigidRegistration)
Tests run: 31, Failures: 3, Errors: 6, Skipped: 0
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] There are test failures.
Please refer to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/surefire-reports for the individual test results.
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 23 seconds
[INFO] Finished at: Wed Jul 24 16:16:30 CDT 2013
[INFO] Final Memory: 96M/1246M
[INFO] ------------------------------------------------------------------------
Build step 'Invoke top-level Maven targets' marked build as failure
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