[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #520
jenkins at imagej.net
jenkins at imagej.net
Wed Jul 24 15:25:48 CDT 2013
See <http://jenkins.imagej.net/job/Fiji-Maven/520/changes>
Changes:
[Johannes Schindelin] Expose the 'Slide Show' plugin from the Macro Interpreter
[Stephan Preibisch] Fixed bug in multi-channel bead registration
[Stephan Preibisch] fixed another bug in setting up multiple tracks
[Jean-Yves Tinevez] TrackMate_: v2.0.4: fix a GUI bug noticed by T. Pietzsch
[Curtis Rueden] Image_Expression_Parser: fix dependency version
[Stephan Preibisch] fixed threshold for integral image bead based registration
[Stephan Preibisch] can provide a current guess of the deconvolved image,
[Stephan Preibisch] formalized loading of previous image including range check
[Curtis Rueden] fiji-lib: add NumberParser class
[Curtis Rueden] TrackMate_: fix some dependency versions
[Curtis Rueden] TrackMate_: use fiji-lib's NumberParser
[Curtis Rueden] .gitignore: Add more jar files
[Curtis Rueden] Update imglib submodule pointer
[Ignacio Arganda-Carreras] Trainable Weka Segmentation: fix rank of threshold application.
[Curtis Rueden] Use imglib2.version property for imglib2 deps
[Curtis Rueden] Fix whitespace
[Curtis Rueden] Update Bio-Formats dependencies to 4.4.8
[Curtis Rueden] Use fiji.version property for inter-plugin deps
[Ignacio Arganda-Carreras] Trainable Weka Segmentation: added method to compute the precision and recall based on the pixel classification after warping (only for splits and mergers).
[Curtis Rueden] Tell Maven that pom-scijava is outside the reactor
[Johannes Schindelin] Upgrade TrakEM2 to the newest pom-scijava version
[Stephan Preibisch] updated deconvolution to the "final" state
[Johannes Schindelin] Use shorter URL in download-launchers
[Johannes Schindelin] Follow ImageJ2's SNAPSHOT versions for now
[Johannes Schindelin] Remove the TrakEM2 module for now
[Johannes Schindelin] Update the ImageJ2 submodule
[Johannes Schindelin] Aaargh... update TrakEM2 to a temporary fork
[Stephan Preibisch] fixed a bug in the weighting scheme, normalizing only if sumweights > 1,
[mail] 3D Objects Counter: be less impolite
[Johannes Schindelin] Move resource back where it belongs
[Stephan Preibisch] it is now possible to load and store PSFs, makes it much more useful
[Ignacio Arganda-Carreras] Trainable Weka Segmentation: corrected method to calculate precision recall.
[Curtis Rueden] Fix up the README a bit
[Curtis Rueden] README.md: also add Kota
[steinbac] Multi_View_Deconvolution: added new logic to select the standard GPU on multi-GPU hosts
[steinbac] LRFFTThreads: changed println labels for timings per iteration to state which steps are conducted on the CPU and which are done on the GPU
[Jenkins] Bump to pom-scijava 1.49
[Jenkins] Bump to pom-scijava 1.50
[Jenkins] Bump to pom-scijava 1.51
[Curtis Rueden] Update ImageJ2 submodule for pom-scijava 1.51
[Johannes Schindelin] Move to release-coupling with ImageJ2, ImgLib2
[Johannes Schindelin] Stop handling uncoupled submodules
[Johannes Schindelin] Build.sh: refactor the use of maven-helper.sh
[Johannes Schindelin] Build.sh: no need to force-install the SSH uploader
[Johannes Schindelin] Build.sh: use the correct MiniMaven version
[Johannes Schindelin] Ignacio wins the prize
[Johannes Schindelin] Add a few more authors to the README
[Jean-Yves Tinevez] Descriptor-based registration: propagate single model to multiple time-points
[Johannes Schindelin] Build.sh: clarify the parameter order of uptodate()
[Johannes Schindelin] Build.sh: Make sure that maven-helper.sh is updated properly
[Johannes Schindelin] Build.sh: avoid Git's 'Already up-to-date' cluttering version numbers
[Johannes Schindelin] Build.sh: if scijava-common could not be updated, fail
[Johannes Schindelin] Build.sh: really redirect 'Already up-to-date' message
[Johannes Schindelin] Build.sh: avoid unnecessary call to maven_helper
[Johannes Schindelin] Build.sh: make sure that just-downloaded files are considered up-to-date
[Johannes Schindelin] download-launchers: fix the version of the ij-launcher.jar
[Johannes Schindelin] Build.sh: download launcher releases instead of snapshots
[Stephan Preibisch] allow the fusion using the first image as bounding box
[Stephan Preibisch] fixed bugs int selecting the standard CUDA device
[Stephan Preibisch] allow nearestneighborinterpolation for fusion of datasets
[Stephan Preibisch] added the option also for time series
[Johannes Schindelin] Make Make_Screencast.bsh truly executable
[Johannes Schindelin] Refactor Make_Screencast.bsh
[Johannes Schindelin] Make_Screencast (cmd-line): allow specifying a region
[Johannes Schindelin] Make_Screencast (cmd-line): allow specifying the frames per second
[Johannes Schindelin] Make_Screencast (cmd-line): allow overwriting existing files
[Johannes Schindelin] Fix install-java3d
[Johannes Schindelin] Special-case MacOSX in Edit>Memory & Threads... again
[Ignacio Arganda-Carreras] Analyze Skeleton: fixed bug when pruning end-point branches on an image without end points reported by Jan Eglinger.
[Johannes Schindelin] Fix second (and later) runs of Temporal-Color Code
[Johannes Schindelin] Build.sh: work around Git for Windows' lack of stat(1)
[Johannes Schindelin] Build.sh: respect the -- option separator
[Johannes Schindelin] Build.sh: propagate the '-x' to other shell scripts
[Stephan Preibisch] fixed two bugs in the overlay fusion for the descriptor based registration
[Johannes Schindelin] Updater_Fix.js: Make sure that ij.IJ is found
[Johannes Schindelin] Add a little utility to update the URLs in Updater_Fix.js
[Johannes Schindelin] Update the URLs in Updater_Fix.js to the newest, latest & greatest
[Ignacio Arganda-Carreras] Trainable Weka Segmentation: added method to create instances in place.
[Ignacio Arganda-Carreras] Trainable Weka Segmentation: create instances in place to improve speed.
[Stephan Preibisch] difference-of-mean does not ignore minmaxset anymore
[Johannes Schindelin] QuickPALM: fix NullPointerException
[Johannes Schindelin] Build.sh: handle 'fiji' and 'ImageJ' target again
[Johannes Schindelin] Update .gitignore for current ImageJ2
[Johannes Schindelin] Weed out .gitignore some
[Johannes Schindelin] fiji.Main: Make sure that the IJ1Patcher has run
[Ignacio Arganda-Carreras] Trainable Weka Segmentation: beautify code.
[Ignacio Arganda-Carreras] Trainable Weka Segmentation: clean code.
[Ignacio Arganda-Carreras] Trainable Weka Segmentation: speed classification.
[Ignacio Arganda-Carreras] Trainable Weka Segmentation: fix bug to prevent getting probabilities after changing classifier in the settings dialog.
[Ignacio Arganda-Carreras] Trainable Weka Segmentation: disable unusable buttons after changing classifier in the settings dialog.
[Jenkins] Bump to pom-scijava 1.53
[Johannes Schindelin] Fix a couple of compiler warnings in fiji-compat's IJ1 hacking code
[Johannes Schindelin] Make sure that ImageJ2's legacy layer gets initialized
[Johannes Schindelin] IJHacker: be nice if ij-legacy already defined some classes
[Johannes Schindelin] Add ij-app as a dependency of fiji-compat
[Johannes Schindelin] Add Help>Switch To Modern Mode
[Johannes Schindelin] Remove some unused imports
[Johannes Schindelin] JavassistHelper: do not rely on isFrozen
[Johannes Schindelin] fiji-compat's Mighty Mouse handling moved to ij-legacy
[Johannes Schindelin] fiji-compat's CompositeImage handling moved to ij-legacy
[Johannes Schindelin] fiji-compat's ImagePlus handling moved to ij-legacy
[Johannes Schindelin] Some of fiji-compat's ij.IJ handling moved to ij-legacy
[Johannes Schindelin] fiji-compat: setting the context class loader moved to ij-legacy
[Johannes Schindelin] IJ1Patcher: legacy headless support moved to ImageJ2
[Johannes Schindelin] IJHacker: code to set the application name moved to ImageJ2
[Johannes Schindelin] Organize imports in FijiClassLoader
[Johannes Schindelin] fiji-compat: move NoSuchMethodError handling to ij-legacy
[Johannes Schindelin] Fix compiler warnings in CheckClassVersions
[Johannes Schindelin] Fix compiler warnings in User_Plugins
[Johannes Schindelin] Fix compiler warnings in FijiClassLoader
[Johannes Schindelin] Fix compiler warnings in fiji.Main
[Johannes Schindelin] Fix compiler warnings in OtherInstance
[Johannes Schindelin] Fix compiler warnings in SetIcon
[Johannes Schindelin] Fix compiler warnings in fiji.command.Command
[Johannes Schindelin] Fix compiler warnings in IJ_Alt_Key_Listener
[Johannes Schindelin] Fix compiler warnings in SimpleExecuter
[Johannes Schindelin] Fix compiler warnings in FileDialogDecorator
[Johannes Schindelin] Deprecate SimpleExecuter
[Johannes Schindelin] Avoid using the SimpleExecuter
[Johannes Schindelin] Stop forcing IJ.getClassLoader() to return a FijiClassLoader
[Johannes Schindelin] Deprecate the FijiClassLoader
[Johannes Schindelin] Retire fiji.command.Command
[Johannes Schindelin] Bu-bye, ImageJA
[Johannes Schindelin] fiji-compat: move GenericDialog patches to ij-legacy
[Johannes Schindelin] fiji-compat: move NonModalGenericDialog patches to ij-legacy
[Johannes Schindelin] JavassistHelper#verify: avoid using the deprecated FijiClassLoader
[Johannes Schindelin] Add the getMenuItem() function family to FijiTools
[Johannes Schindelin] Also move User_Plugins#installPlugin() to FijiTools
[Johannes Schindelin] Moved another ImageJ 1.x patch to ij-legacy
[Johannes Schindelin] Move the ImageJ 1.x windows' icon logic to ij-legacy
[Johannes Schindelin] Remove the OtherInstance logic from fiji-compat
[Johannes Schindelin] fiji-compat: -batch-no-exit handling moved to ij-legacy
[Johannes Schindelin] Move the prefsDir handling to ij-legacy
[Johannes Schindelin] Move Toolbar handling from fiji-compat to ij-legacy
[Johannes Schindelin] fiji-compat: move the JavaScriptEvaluator patching to ij-legacy
[Johannes Schindelin] fiji-compat: move the Bio-Formats detection patch to ij-legacy
[Johannes Schindelin] fiji-compat: move the symlink fix for DragAndDrop to ij-legacy
[Johannes Schindelin] fiji-compat: remove WindowManager#setCurrentWindow(ImageWindow, boolean)
[Johannes Schindelin] Move fiji-compat's ij.macro.Function#call() patch to ij-legacy
[Johannes Schindelin] Move File>Import>Image Sequence patching to ij-legacy
[Johannes Schindelin] Port fiji-compat's ij.macro.Interpreter patch to ij-legacy
[Johannes Schindelin] Stop special-casing Fiji for Open StartupMacros
[Johannes Schindelin] No longer patch ImageJ 1.x to know about StartupMacros.fiji.ijm
[Johannes Schindelin] fiji-compat: move all HTTPS handling to ij-legacy
[Johannes Schindelin] fiji-compat: move Script Editor hooks to ij-legacy
[Johannes Schindelin] Rename gentlyRunPlugIn() into a less German name
[Johannes Schindelin] Move User_Plugins#runPlugIn() to Main
[Johannes Schindelin] fiji.Main: document runPlugInGently()
[Johannes Schindelin] Move the Fiji-specific Refresh Menus handling into its own plugin
[Johannes Schindelin] Make MenuRefresher a Runnable
[Johannes Schindelin] Use the new LegacyExtensions#runAfterRefreshMenus()
[Johannes Schindelin] Retire the IJHacker
[Johannes Schindelin] Fix a comment
[Johannes Schindelin] Automatically create a modern ImageJ context upon startup
[Johannes Schindelin] Fix ./fiji --run 'Switch to Modern Mode'
[Johannes Schindelin] Fix-Updater: Bump the versions to the current ones
[Johannes Schindelin] Fiji Updater: use the remote bootstrap.js
[Johannes Schindelin] Fiji_Updater: deprecate unused classes
[Johannes Schindelin] Fix 'Align by line ROI' without scaling but with rotation
[Johannes Schindelin] Deprecate the JavassistHelper
[clackn] allow to save matched points and models into the descriptor parameters
[Jenkins] Bump to pom-scijava 1.54
[Jenkins] Bump to pom-scijava 1.55
[Stephan Preibisch] fixed a bug in the fusion that creates different output images
[Stephan Preibisch] removed unnecessary debug messages and comment
[Jenkins] Bump to pom-scijava 1.56
[Johannes Schindelin] .mailmap: attribute two more email addresses properly
[Johannes Schindelin] Fix scope of all those JUnit dependencies
[Stephan Preibisch] fixed a bug in the FIBSEM reader, there was a wrong offset
[Jenkins] Bump to pom-scijava 1.57
[Johannes Schindelin] Move all unit tests into the appropriate src/test/java/
[Johannes Schindelin] Touch up the first section of the README
[Johannes Schindelin] README: Mention ImageJ.sh
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[INFO] plugins/Siox_Segmentation.jar
[INFO] plugins/Snakuscule_.jar
[INFO] plugins/SplineDeformationGenerator_.jar
[INFO] plugins/StackReg_.jar
[INFO] plugins/Stack_Manipulation.jar
[INFO] plugins/Statistical_Region_Merging.jar
[INFO] plugins/Sync_Win.jar
[INFO] plugins/Thread_Killer.jar
[INFO] plugins/Threshold_Colour.jar
[INFO] plugins/Time_Stamper.jar
[INFO] plugins/ToAST_.jar
[INFO] plugins/TopoJ_.jar
[INFO] plugins/TrackMate_.jar
[INFO] plugins/Trainable_Segmentation.jar
[INFO] plugins/TransformJ_.jar
[INFO] plugins/TurboReg_.jar
[INFO] plugins/UnwarpJ_.jar
[INFO] jars/Updater_Fix.jar
[INFO] plugins/Vaa3d_Reader.jar
[INFO] plugins/Video_Editing.jar
[INFO] plugins/View5D_.jar
[INFO] plugins/Volume_Calculator.jar
[INFO] plugins/Volume_Viewer.jar
[INFO] plugins/bUnwarpJ_.jar
[INFO] plugins/blockmatching_.jar
[INFO] jars/mij.jar
[INFO] plugins/panorama_.jar
[INFO] plugins/register_virtual_stack_slices.jar
[INFO] plugins/registration_3d.jar
[INFO] jars/weave_jy2java.jar
[INFO] Aggregator project for the Fiji submodules
[INFO] ------------------------------------------------------------------------
[INFO] Building Aggregator project for the Fiji project
[INFO] task-segment: [install]
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[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from mvnplugins.fusesource.org
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot net.imagej:imagej-maven-plugin:0.1.1-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] [buildnumber:create {execution: default}]
[INFO] Checking for local modifications: skipped.
[INFO] Updating project files from SCM: skipped.
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace
[INFO] Storing buildNumber: c26e1727d9c033a3bb2c80bba6ec47047d183a2c at timestamp: 1374697537407
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] Setting rootdir: /data/devel/jenkins/jobs/Fiji-Maven/workspace
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/pom-fiji/2.0.0-SNAPSHOT/pom-fiji-2.0.0-SNAPSHOT.pom
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pom-fiji:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pom-fiji:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:pom-fiji:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] ------------------------------------------------------------------------
[INFO] Building Aggregator project for the Fiji plugins
[INFO] task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/pom-fiji-plugins/2.0.0-SNAPSHOT/pom-fiji-plugins-2.0.0-SNAPSHOT.pom
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pom-fiji-plugins:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pom-fiji-plugins:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:pom-fiji-plugins:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] ------------------------------------------------------------------------
[INFO] Building jars/fiji-lib.jar
[INFO] task-segment: [install]
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[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 27 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/surefire-reports
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T E S T S
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Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/fiji-lib/2.0.0-SNAPSHOT/fiji-lib-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/fiji-lib/2.0.0-SNAPSHOT/fiji-lib-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:fiji-lib:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:fiji-lib:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:fiji-lib:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying fiji-lib-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying ij-1.48a.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] ------------------------------------------------------------------------
[INFO] Building jars/pal-optimization.jar
[INFO] task-segment: [install]
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[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/src/main/resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 22 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/surefire-reports
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T E S T S
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Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/pal-optimization/2.0.0-SNAPSHOT/pal-optimization-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/pal-optimization/2.0.0-SNAPSHOT/pal-optimization-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pal-optimization:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pal-optimization:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:pal-optimization:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying pal-optimization-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] ------------------------------------------------------------------------
[INFO] Building jars/VIB-lib.jar
[INFO] task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 30 resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 180 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] Compiling 10 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/test-classes
[INFO] [surefire:test {execution: default-test}]
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running distance.TestEuclidean
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.031 sec
Running distance.TestCorrelation
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec
Running distance.TestMutualInformation
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 sec
Running math3d.TestEigenvalueDecompositions
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.492 sec
Running vib.TestRigidRegistration
Tests run: 6, Failures: 0, Errors: 6, Skipped: 0, Time elapsed: 0.037 sec <<< FAILURE!
Running vib.TestFastMatrix
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec
Running util.TestPenalty
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec
Running util.TestFindConnectedRegions
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.087 sec
Running landmarks.TestLoading
Tests run: 3, Failures: 3, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec <<< FAILURE!
Results :
Failed tests: testLoadingXML(landmarks.TestLoading)
testLoadingTSV(landmarks.TestLoading)
testLoadingPseudoYAML(landmarks.TestLoading)
Tests in error:
testRegistration8BitGray(vib.TestRigidRegistration): (..)
testRegistration8BitGray(vib.TestRigidRegistration)
testRegistrationMaterials(vib.TestRigidRegistration): (..)
testRegistrationMaterials(vib.TestRigidRegistration)
testRegistration12BitGray(vib.TestRigidRegistration): (..)
testRegistration12BitGray(vib.TestRigidRegistration)
Tests run: 31, Failures: 3, Errors: 6, Skipped: 0
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] There are test failures.
Please refer to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/surefire-reports for the individual test results.
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 22 seconds
[INFO] Finished at: Wed Jul 24 15:25:48 CDT 2013
[INFO] Final Memory: 96M/1246M
[INFO] ------------------------------------------------------------------------
Build step 'Invoke top-level Maven targets' marked build as failure
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