[ImageJ-builds] Build failed in Jenkins: fiji-full #598
Jenkins Daemon
jenkins at qa.nest-initiative.org
Mon Jan 21 17:20:22 CST 2013
See <https://qa.nest-initiative.org/job/fiji-full/598/changes>
Changes:
[Johannes Schindelin] Add some Javadocs to Align_Image#align()
[Johannes Schindelin] Align Image: Optionally skip scaling and/or rotation
[Johannes Schindelin] Align Image: support color images, too
[Johannes Schindelin] IJ Hacker: fix an NPE with ImageJ 1.47a
------------------------------------------
[...truncated 217 lines...]
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-scripting>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/BeanShell_Interpreter>
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Updater>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Updater/src/main/java/fiji/updater/Adapter.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Bug_Submitter>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/Bug_Submitter.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 9 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CLI_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CPU_Meter>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Calculator_Plus>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Clojure_Interpreter>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 42 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Colocalisation_Analysis>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Color_Histogram>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Color_Inspector_3D>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Colour_Deconvolution>
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/CorrectBleach_>
Compiling 32 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Plugins>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Opener>
Compiling 146 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SPIM_Registration>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 59 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Stitching_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Descriptor_based_registration>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-0.6.0-SNAPSHOT.jar'>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Dichromacy_>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Differentials_>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Directionality_>
Compiling 30 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imageware>
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/wavelets>
Compiling 31 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Extended_Depth_Field>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Extended_Depth_Field/src/main/java/surfacemap/SurfaceMap3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Lasso_and_Blow_Tool>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Skeletonize3D_>
Compiling 117 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 57 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Simple_Neurite_Tracer>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 18 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/BSplineModel.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/FS_Align_TrakEM2>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-0.6.0-SNAPSHOT.jar'>
Compiling 66 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/image/Image.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 11 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/FeatureJ_>
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Feature_Detection>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/JRuby_Interpreter>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/JRuby_Interpreter/src/main/java/JRuby/JRuby_Interpreter.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Javascript_>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Javascript_/src/main/java/Javascript/Javascript_Interpreter.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jython_Interpreter>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Jython_Interpreter/src/main/java/Jython/Jython_Interpreter.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 29 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fake>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Refresh_Javas>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Refresh_Javas/src/main/java/fiji/scripting/java/Refresh_Javas.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 38 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Script_Editor>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Developer>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Developer/src/main/java/fiji/Wiki_Editor.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Developer/src/main/java/fiji/Wiki_Editor.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 6 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Package_Maker>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Package_Maker/src/main/java/fiji/packaging/TarBz2Packager.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 129 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/FlowJ_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Graph_Cut>
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Gray_Morphology>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Gray_Morphology/src/main/java/mmorpho/LocalHistogram.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Helmholtz_Analysis>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/IJ_Robot>
Compiling 47 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/IO_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 319 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/jep>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 45 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Image_Expression_Parser>
Compiling 12 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Interactive_3D_Surface_Plot>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/IsoData_Classifier>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Kuwahara_Filter>
Compiling 6 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/LSM_Reader>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/LSM_Reader/src/main/java/org/imagearchive/lsm/reader/Reader.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 46 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/LSM_Toolbox>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Linear_Kuwahara>
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/LocalThickness_>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/MTrack2_>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/MTrack2_/src/main/java/MTrack2_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/MTrack2_/src/main/java/MTrack2_.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/MTrackJ_>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/MTrackJ_/src/main/java/MTJGenial.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/M_I_P>
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Manual_Tracking>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Manual_Tracking/src/main/java/Manual_Tracking.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/MosaicJ_>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/MosaicJ_/src/main/java/MosaicJ_.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Multi_Kymograph>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/PIV_analyser>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/PointPicker_>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/PointPicker_/src/main/java/PointPicker_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 14 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/QuickPALM_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/RATS_>
Compiling 11 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/RandomJ_>
Compiling 14 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Reconstruct_Reader>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-0.6.0-SNAPSHOT.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-0.6.0-SNAPSHOT.jar'>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Scala_Interpreter>
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Series_Labeler>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Series_Labeler/src/main/java/HybridDateFormat.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SheppLogan_>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/SheppLogan_/src/main/java/SheppLogan_.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Sholl_Analysis>
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Sholl_Analysis/src/main/java/Sholl_Analysis.java>:174: cannot find symbol
symbol : method deleteRoi()
location: class ij.ImagePlus
img.deleteRoi();
^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Sholl_Analysis/src/main/java/Sholl_Analysis.java>:1270: cannot find symbol
symbol : method getBitDepth()
location: class ij.process.ImageProcessor
final int type = ip.getBitDepth();
^
2 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
at imagej.build.MiniMaven.main(MiniMaven.java:133)
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Warning: <https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools
Warning: <https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-0.6.0-SNAPSHOT.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-0.6.0-SNAPSHOT.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-0.6.0-SNAPSHOT.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/mpicbg-0.6.0-SNAPSHOT.jar'>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Sholl_Analysis>
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Sholl_Analysis/src/main/java/Sholl_Analysis.java>:174: cannot find symbol
symbol : method deleteRoi()
location: class ij.ImagePlus
img.deleteRoi();
^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Sholl_Analysis/src/main/java/Sholl_Analysis.java>:1270: cannot find symbol
symbol : method getBitDepth()
location: class ij.process.ImageProcessor
final int type = ip.getBitDepth();
^
2 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
at imagej.build.MiniMaven.main(MiniMaven.java:133)
Build step 'Execute shell' marked build as failure
More information about the ImageJ-builds
mailing list