[ImageJ-builds] Build failed in Jenkins: fiji-full #597

Jenkins Daemon jenkins at qa.nest-initiative.org
Mon Jan 21 14:09:13 CST 2013 

See <https://qa.nest-initiative.org/job/fiji-full/597/changes>

Changes:

[tiago.ferreira] Adding old files

[tiago.ferreira] Mask respects the fit curve option

[tiago.ferreira] Foreground (target) color is now always non-zero

[tiago.ferreira] Fixed DoSpikeSupretion

[tiago.ferreira] on 2.3

[tiago.ferreira] Version 2.3a

[tiago.ferreira] Reinstated DoSpikeSupression option

[tiago.ferreira] tidy makeMask

[tiago.ferreira] Option to restrict area of analysis w/ orthogonal lines

[tiago.ferreira] Fixed rounding error in makeMask

[tiago.ferreira] Fixed duplicated points in Bresenham's algorithm

[tiago.ferreira] Minor fixes

[tiago.ferreira] Version 2.3c

[tiago.ferreira] Can be aborted by holding Esc

[tiago.ferreira] Initial support for 3D Sholl

[tiago.ferreira] 3D Sholl checks connectivity within slice

[tiago.ferreira] Started performance improvements in 3D Sholl

[tiago.ferreira] Improved performance of 3D analysis

[tiagoalvespedrosa] Minor performance improvement in 3D Sholl

[tiagoalvespedrosa] removed some files

[tiagoalvespedrosa] cleaned more old files

[tiagoalvespedrosa] Removed old backups

[tiagoalvespedrosa] Minor fixes

[tiagoalvespedrosa] Finalized version 3

[tiagoalvespedrosa] Added copyright notice

[tiagoalvespedrosa] Added copyright notice

[tiagoalvespedrosa] Added copyright notice

[tiagoalvespedrosa] Fixed conflict

[tiagoalvespedrosa] Register maximum of raw data like SNT

[tiagoalvespedrosa] Mask is coded with Matlab's jet color map

[tiagoalvespedrosa] Resolved ambiguity in ramification index

[tiagoalvespedrosa] End radius does not need to be explicitly defined by the user

[tiagoalvespedrosa] All calculations are done using real world units

[tiagoalvespedrosa] Save all the data rather than just the single profile

[tiagoalvespedrosa] Ignore radii that do not allow counts larger than minCluster

[tiagoalvespedrosa] Added dialog listeners

[tiagoalvespedrosa] Added remaining listeners

[tiagoalvespedrosa] Added Sholl_Utils

[tiagoalvespedrosa] Use ArrayList in 3D analysis

[tiagoalvespedrosa] Detect 3D clusters more accurately

[tiagoalvespedrosa] Use chessboard distances to assess connectivity.

[tiagoalvespedrosa] Output Sholl decay as -k

[tiagoalvespedrosa] Minor change: Optimized placement of plot label

[tiagoalvespedrosa] Name change: Removed "Advanced" from package name

[tiagoalvespedrosa] Use scientific notation if set in Analyze>Set Measurements...

[Johannes Schindelin] Remove obsolete .java files

[Johannes Schindelin] Replace Mac line endings with standard ones

[Johannes Schindelin] Move files into a standard Maven directory layout

[Johannes Schindelin] Turn it into a Maven project

[tiagoalvespedrosa] Replaced line endings

[tiagoalvespedrosa] changed min. IJ version in pom to 1.46h

[Johannes Schindelin] Compile the Sholl Analysis plugin by default

[Johannes Schindelin] Upgrade the required version of Stephan Saalfeld's mpicbg library

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<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Sholl_Analysis/src/main/java/Sholl_Analysis.java>:174: cannot find symbol
symbol  : method deleteRoi()
location: class ij.ImagePlus
            img.deleteRoi();
               ^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Sholl_Analysis/src/main/java/Sholl_Analysis.java>:1270: cannot find symbol
symbol  : method getBitDepth()
location: class ij.process.ImageProcessor
            final int type = ip.getBitDepth();
                               ^
2 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
	at imagej.build.MiniMaven.main(MiniMaven.java:133)
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
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<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Sholl_Analysis/src/main/java/Sholl_Analysis.java>:174: cannot find symbol
symbol  : method deleteRoi()
location: class ij.ImagePlus
            img.deleteRoi();
               ^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Sholl_Analysis/src/main/java/Sholl_Analysis.java>:1270: cannot find symbol
symbol  : method getBitDepth()
location: class ij.process.ImageProcessor
            final int type = ip.getBitDepth();
                               ^
2 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
	at imagej.build.MiniMaven.main(MiniMaven.java:133)
Build step 'Execute shell' marked build as failure

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