[ImageJ-builds] Build failed in Jenkins: ImageJ #3884

jenkins at imagej.net jenkins at imagej.net
Wed Jan 9 10:56:19 CST 2013 

See <http://jenkins.imagej.net/job/ImageJ/3884/changes>

Changes:

[Barry DeZonia] Supply LUTs shipped with ImageJ 1.x

[Barry DeZonia] Blacklist the old Lookup Table menu entries

[Barry DeZonia] Populate the menus with Lookup Tables

[Barry DeZonia] Reorganize order of entries for readability

[Barry DeZonia] Add a TODO

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240K uploaded  (ij-data-2.0.0-20130109.165602-936-sources.jar)
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 9 seconds
[INFO] Finished at: Wed Jan 09 10:56:04 CST 2013
[INFO] Final Memory: 34M/654M
[INFO] ------------------------------------------------------------------------
Deploying core/io/
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Building ImageJ Core: I/O
[INFO]    task-segment: [deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] Checking for local modifications: skipped.
[INFO] Updating project files from SCM: skipped.
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/ImageJ/workspace/core/io && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/ImageJ/workspace/core/io
[INFO] Storing buildNumber: 5a9e4dbf80c23a16b263711584718add62662c2a at timestamp: 1357750567644
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/ImageJ/workspace/core/io && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/ImageJ/workspace/core/io
[INFO] Storing buildScmBranch: UNKNOWN
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Nothing to compile - all classes are up to date
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/ImageJ/workspace/core/io/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/ImageJ/workspace/core/io/target/surefire-reports

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 T E S T S
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Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/ImageJ/workspace/core/io/target/ij-io-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/net/imagej/ij-io/2.0.0-SNAPSHOT/ij-io-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/ImageJ/workspace/core/io/target/ij-io-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/net/imagej/ij-io/2.0.0-SNAPSHOT/ij-io-2.0.0-SNAPSHOT-sources.jar
[INFO] [deploy:deploy {execution: default-deploy}]
[INFO] Retrieving previous build number from imagej.snapshots
Uploading: http://maven.imagej.net/content/repositories/snapshots/net/imagej/ij-io/2.0.0-SNAPSHOT/ij-io-2.0.0-20130109.165609-897.jar
Jan 9, 2013 10:56:09 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
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22K uploaded  (ij-io-2.0.0-20130109.165609-897.jar)
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'artifact net.imagej:ij-io'
Jan 9, 2013 10:56:09 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'snapshot net.imagej:ij-io:2.0.0-SNAPSHOT'
Jan 9, 2013 10:56:10 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Uploading project information for ij-io 2.0.0-20130109.165609-897
Jan 9, 2013 10:56:10 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Retrieving previous build number from imagej.snapshots
Uploading: http://maven.imagej.net/content/repositories/snapshots/net/imagej/ij-io/2.0.0-SNAPSHOT/ij-io-2.0.0-20130109.165609-897-sources.jar
Jan 9, 2013 10:56:10 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
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27K uploaded  (ij-io-2.0.0-20130109.165609-897-sources.jar)
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5 seconds
[INFO] Finished at: Wed Jan 09 10:56:10 CST 2013
[INFO] Final Memory: 35M/639M
[INFO] ------------------------------------------------------------------------
[/tmp/precompiled.1.jar]
  End-of-central-directory signature not found.  Either this file is not
  a zipfile, or it constitutes one disk of a multi-part archive.  In the
  latter case the central directory and zipfile comment will be found on
  the last disk(s) of this archive.
Deploying core/launcher/
[INFO] Scanning for projects...
[INFO] snapshot org.apache.maven.plugins:maven-nar-plugin:2.1-SNAPSHOT: checking for updates from mvnplugins.fusesource.org
[INFO] snapshot org.apache.maven.plugins:maven-nar-plugin:2.1-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot org.apache.maven.plugins:maven-nar-plugin:2.1-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot org.apache.maven.plugins:maven-nar-plugin:2.1-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] snapshot org.apache.maven.plugins:maven-nar-plugin:2.1-SNAPSHOT: checking for updates from loci.releases
[INFO] snapshot org.apache.maven.plugins:maven-nar-plugin:2.1-SNAPSHOT: checking for updates from loci.snapshots
[INFO] snapshot org.apache.maven.plugins:maven-nar-plugin:2.1-SNAPSHOT: checking for updates from java.net
[INFO] snapshot net.sf.antcontrib:cpptasks-parallel:1.0-beta-5-parallel-1-SNAPSHOT: checking for updates from mvnplugins.fusesource.org
[INFO] snapshot net.sf.antcontrib:cpptasks-parallel:1.0-beta-5-parallel-1-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot net.sf.antcontrib:cpptasks-parallel:1.0-beta-5-parallel-1-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot net.sf.antcontrib:cpptasks-parallel:1.0-beta-5-parallel-1-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] snapshot net.sf.antcontrib:cpptasks-parallel:1.0-beta-5-parallel-1-SNAPSHOT: checking for updates from apache.snapshots
[INFO] snapshot net.sf.antcontrib:cpptasks-parallel:1.0-beta-5-parallel-1-SNAPSHOT: checking for updates from loci.releases
[INFO] snapshot net.sf.antcontrib:cpptasks-parallel:1.0-beta-5-parallel-1-SNAPSHOT: checking for updates from loci.snapshots
[INFO] snapshot net.sf.antcontrib:cpptasks-parallel:1.0-beta-5-parallel-1-SNAPSHOT: checking for updates from java.net
[INFO] ------------------------------------------------------------------------
[INFO] Building ImageJ Launcher
[INFO]    task-segment: [deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [nar:nar-validate {execution: default-nar-validate}]
[INFO] Using AOL: amd64-Linux-gcc
[INFO] [buildnumber:create {execution: default}]
[INFO] Checking for local modifications: skipped.
[INFO] Updating project files from SCM: skipped.
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/ImageJ/workspace/core/launcher && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/ImageJ/workspace/core/launcher
[INFO] Storing buildNumber: 5a9e4dbf80c23a16b263711584718add62662c2a at timestamp: 1357750575578
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/ImageJ/workspace/core/launcher && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/ImageJ/workspace/core/launcher
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] [nar:nar-download {execution: default-nar-download}]
[INFO] [nar:nar-unpack {execution: default-nar-unpack}]
[INFO] [nar:nar-gnu-configure {execution: default-nar-gnu-configure}]
[INFO] [nar:nar-system-generate {execution: default-nar-system-generate}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/ImageJ/workspace/core/launcher/src/main/resources
[INFO] [nar:nar-resources {execution: default-nar-resources}]
[INFO] Copied 0 resources
[INFO] [nar:nar-gnu-resources {execution: default-nar-gnu-resources}]
[INFO] [nar:nar-vcproj {execution: default-nar-vcproj}]
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 3 source files to /data/devel/jenkins/jobs/ImageJ/workspace/core/launcher/target/classes
[INFO] [nar:nar-javah {execution: default-nar-javah}]
[INFO] [nar:nar-gnu-make {execution: default-nar-gnu-make}]
[INFO] [nar:nar-compile {execution: default-nar-compile}]
[INFO] Compiling 1 native files
[ERROR] /data/devel/jenkins/jobs/ImageJ/workspace/core/launcher/src/main/c/ImageJ.c:62:17: fatal error: jni.h: No such file or directory
[ERROR] compilation terminated.
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] NAR: Compile failed

Embedded error: gcc failed with return code 1
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 7 seconds
[INFO] Finished at: Wed Jan 09 10:56:19 CST 2013
[INFO] Final Memory: 43M/643M
[INFO] ------------------------------------------------------------------------
Build step 'Execute shell' marked build as failure
Archiving artifacts
Recording test results
Performance: No threshold configured for making the test unstable
Performance: No threshold configured for making the test failure
Performance: Recording JUnit reports '**/TEST-*.xml'
Performance: Parsing JUnit report file TEST-imagej.core.commands.upload.InteractiveUploadTest.xml
Performance: Parsing JUnit report file TEST-imagej.command.CommandServiceTest.xml
Performance: Parsing JUnit report file TEST-imagej.display.DisplayTest.xml
Performance: Parsing JUnit report file TEST-imagej.menu.ShadowMenuTest.xml
Performance: Parsing JUnit report file TEST-imagej.object.ObjectIndexTest.xml
Performance: Parsing JUnit report file TEST-imagej.object.SortedObjectIndexTest.xml
Performance: Parsing JUnit report file TEST-imagej.plugin.PluginIndexTest.xml
Performance: Parsing JUnit report file TEST-imagej.script.JavascriptTest.xml
Performance: Parsing JUnit report file TEST-imagej.service.ServiceIndexTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.AppUtilsTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.ByteArrayTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.CheckSezpozTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.ClassUtilsTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.ColorRGBTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.DoubleArrayTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.FileUtilsTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.FloatArrayTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.IntArrayTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.LongArrayTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.PrefsTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.ShortArrayTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.UnitUtilsTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.DatasetTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.ExtentsTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.PositionTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.TestCursorSpeeds.xml
Performance: Parsing JUnit report file TEST-imagej.data.display.ImageCanvasTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.overlay.TestBinaryMaskOverlay.xml
Performance: Parsing JUnit report file TEST-imagej.data.table.DefaultResultsTableTest.xml
Performance: Parsing JUnit report file TEST-imagej.legacy.LegacyImageMapTest.xml
Performance: Parsing JUnit report file TEST-imagej.legacy.OverlayHarmonizerTest.xml
Performance: Parsing JUnit report file TEST-imagej.legacy.translate.LegacyUtilsTest.xml
Performance: Parsing JUnit report file TEST-imagej.updater.core.UpdaterTest.xml
Performance: Parsing JUnit report file TEST-imagej.script.BeanshellTest.xml
Performance: Parsing JUnit report file TEST-imagej.script.java.JavaEngineTest.xml
Performance: Parsing JUnit report file TEST-imagej.updater.core.UpdaterGUITest.xml
Performance: File TEST-imagej.core.commands.upload.InteractiveUploadTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.command.CommandServiceTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.display.DisplayTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.menu.ShadowMenuTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.object.ObjectIndexTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.object.SortedObjectIndexTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.plugin.PluginIndexTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.script.JavascriptTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.service.ServiceIndexTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.AppUtilsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.ByteArrayTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.CheckSezpozTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.ClassUtilsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.ColorRGBTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.DoubleArrayTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.FileUtilsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.FloatArrayTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.IntArrayTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.LongArrayTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.PrefsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.ShortArrayTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.UnitUtilsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.DatasetTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.ExtentsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.PositionTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.TestCursorSpeeds.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.display.ImageCanvasTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.overlay.TestBinaryMaskOverlay.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.table.DefaultResultsTableTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.legacy.LegacyImageMapTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.legacy.OverlayHarmonizerTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.legacy.translate.LegacyUtilsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.updater.core.UpdaterTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.script.BeanshellTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.script.java.JavaEngineTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.updater.core.UpdaterGUITest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE

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