[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #1582
jenkins at imagej.net
jenkins at imagej.net
Tue Apr 30 17:13:31 CDT 2013
See <http://jenkins.imagej.net/job/Fiji-minimal/1582/>
------------------------------------------
[...truncated 365 lines...]
+ FIJILAUNCHER=fiji-linux64
+ FIJILAUNCHER=fiji-linux64
+ test -n linux64
+ test -z
+ get_java_home
+ test -d
+ test -n linux-amd64
+ test -d ./java/linux-amd64
+ ls -t ./java/linux-amd64
+ head -n 1
+ echo ./java/linux-amd64/jdk1.6.0_24/jre
+ JAVA_HOME=./java/linux-amd64/jdk1.6.0_24/jre
+ test -z linux64
+ test -f ./java/linux-amd64/jdk1.6.0_24/jre/lib/tools.jar
+ test -f ./java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
+ test -n ./java/linux-amd64/jdk1.6.0_24/jre
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre/jre
+ export PATH=./java/linux-amd64/jdk1.6.0_24/jre/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/sbin:/sbin:/bin
+ get_java_home
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ echo ./java/linux-amd64/jdk1.6.0_24/jre
+ get_java_home
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ echo ./java/linux-amd64/jdk1.6.0_24/jre
+ PATH=./java/linux-amd64/jdk1.6.0_24/jre/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/sbin:/sbin:/bin:./java/linux-amd64/jdk1.6.0_24/jre/bin:./java/linux-amd64/jdk1.6.0_24/jre/../bin
+ export PATH
+ uname -s
+ test Darwin = Linux
+ cd .
+ pwd
+ CWD=/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji
+ ARGV0=/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/./Build.sh
+ SCIJAVA_COMMON=/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/modules/scijava-common
+ MAVEN_DOWNLOAD=/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/modules/scijava-common/bin/maven-helper.sh
+ VERSION=2.0.0-SNAPSHOT
+ maven_update sc.fiji:javac:2.0.0-SNAPSHOT net.imagej:ij-minimaven:2.0.0-SNAPSHOT net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
+ force_update=
+ uptodate /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/./Build.sh /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/modules/scijava-common/bin/maven-helper.sh
+ test -f /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/modules/scijava-common/bin/maven-helper.sh
+ test /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/modules/scijava-common/bin/maven-helper.sh -nt /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/./Build.sh
+ artifactId=javac:2.0.0-SNAPSHOT
+ version=2.0.0-SNAPSHOT
+ artifactId=javac
+ path=jars/javac-2.0.0-SNAPSHOT.jar
+ test -z
+ cd /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji
+ test -f jars/javac.jar
+ test ajars/javac-[0-9]*.jar = ajars/javac-2.0.0-SNAPSHOT.jar
+ test -f jars/javac-[0-9]*.jar
+ continue
+ uptodate /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/./Build.sh jars/javac-2.0.0-SNAPSHOT.jar
+ test -f jars/javac-2.0.0-SNAPSHOT.jar
+ echo Downloading sc.fiji:javac:2.0.0-SNAPSHOT
Downloading sc.fiji:javac:2.0.0-SNAPSHOT
+ cd jars/
+ sh /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/modules/scijava-common/bin/maven-helper.sh install sc.fiji:javac:2.0.0-SNAPSHOT
+ test ! -f jars/javac-2.0.0-SNAPSHOT.jar
+ artifactId=ij-minimaven:2.0.0-SNAPSHOT
+ version=2.0.0-SNAPSHOT
+ artifactId=ij-minimaven
+ path=jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ test -z
+ cd /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji
+ test -f jars/ij-minimaven.jar
+ test ajars/ij-minimaven-[0-9]*.jar = ajars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ test -f jars/ij-minimaven-[0-9]*.jar
+ continue
+ uptodate /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/./Build.sh jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ test -f jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ echo Downloading net.imagej:ij-minimaven:2.0.0-SNAPSHOT
Downloading net.imagej:ij-minimaven:2.0.0-SNAPSHOT
+ cd jars/
+ sh /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/modules/scijava-common/bin/maven-helper.sh install net.imagej:ij-minimaven:2.0.0-SNAPSHOT
+ test ! -f jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ artifactId=ij-updater-ssh:2.0.0-SNAPSHOT
+ version=2.0.0-SNAPSHOT
+ artifactId=ij-updater-ssh
+ path=jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ test -z
+ cd /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji
+ test -f jars/ij-updater-ssh.jar
+ test ajars/ij-updater-ssh-[0-9]*.jar = ajars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ test -f jars/ij-updater-ssh-[0-9]*.jar
+ continue
+ uptodate /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/./Build.sh jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ test -f jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ echo Downloading net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
Downloading net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
+ cd jars/
+ sh /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/modules/scijava-common/bin/maven-helper.sh install net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
+ test ! -f jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ OPTIONS=-Dimagej.app.directory="/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji"
+ test 3 -gt 0
+ OPTIONS=-Dimagej.app.directory="/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji" -Dminimaven.updateinterval=1
+ shift
+ test 2 -gt 0
+ break
+ test 2 = 0
+ artifactId=--
+ artifactId=--
+ artifactId=--
+ eval sh /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/bin/ImageJ.sh --mini-maven -Dimagej.app.directory="/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji" -Dminimaven.updateinterval=1 -DartifactId=-- install
+ sh /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/bin/ImageJ.sh --mini-maven -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji -Dminimaven.updateinterval=1 -DartifactId=-- install
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Compiling 26 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/fiji-lib
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 22 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/pal-optimization
Compiling 190 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB-lib
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 371 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:50: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.real.FloatType,net.imglib2.img.basictypeaccess.array.FloatArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.FloatArray>>
final Cells< FloatArray, AbstractCell< FloatArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:86: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.real.DoubleType,net.imglib2.img.basictypeaccess.array.DoubleArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.DoubleArray>>
final Cells< DoubleArray, AbstractCell< DoubleArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:122: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.LongType,net.imglib2.img.basictypeaccess.array.LongArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.LongArray>>
final Cells< LongArray, AbstractCell< LongArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:158: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.IntType,net.imglib2.img.basictypeaccess.array.IntArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.IntArray>>
final Cells< IntArray, AbstractCell< IntArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:194: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedIntType,net.imglib2.img.basictypeaccess.array.IntArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.IntArray>>
final Cells< IntArray, AbstractCell< IntArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:230: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.ShortType,net.imglib2.img.basictypeaccess.array.ShortArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ShortArray>>
final Cells< ShortArray, AbstractCell< ShortArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:266: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedShortType,net.imglib2.img.basictypeaccess.array.ShortArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ShortArray>>
final Cells< ShortArray, AbstractCell< ShortArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:302: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.ByteType,net.imglib2.img.basictypeaccess.array.ByteArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ByteArray>>
final Cells< ByteArray, AbstractCell< ByteArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:338: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedByteType,net.imglib2.img.basictypeaccess.array.ByteArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ByteArray>>
final Cells< ByteArray, AbstractCell< ByteArray > > cells = cellImg.getCells();
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
9 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:444)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:375)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:398)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:375)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:398)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
+ artifactId=verbose=true
+ artifactId=verbose=true
+ artifactId=verbose=true
+ eval sh /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/bin/ImageJ.sh --mini-maven -Dimagej.app.directory="/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji" -Dminimaven.updateinterval=1 -DartifactId=verbose=true install
+ sh /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/bin/ImageJ.sh --mini-maven -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji -Dminimaven.updateinterval=1 -DartifactId=verbose=true install
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Compiling 371 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:50: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.real.FloatType,net.imglib2.img.basictypeaccess.array.FloatArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.FloatArray>>
final Cells< FloatArray, AbstractCell< FloatArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:86: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.real.DoubleType,net.imglib2.img.basictypeaccess.array.DoubleArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.DoubleArray>>
final Cells< DoubleArray, AbstractCell< DoubleArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:122: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.LongType,net.imglib2.img.basictypeaccess.array.LongArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.LongArray>>
final Cells< LongArray, AbstractCell< LongArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:158: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.IntType,net.imglib2.img.basictypeaccess.array.IntArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.IntArray>>
final Cells< IntArray, AbstractCell< IntArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:194: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedIntType,net.imglib2.img.basictypeaccess.array.IntArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.IntArray>>
final Cells< IntArray, AbstractCell< IntArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:230: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.ShortType,net.imglib2.img.basictypeaccess.array.ShortArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ShortArray>>
final Cells< ShortArray, AbstractCell< ShortArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:266: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedShortType,net.imglib2.img.basictypeaccess.array.ShortArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ShortArray>>
final Cells< ShortArray, AbstractCell< ShortArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:302: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.ByteType,net.imglib2.img.basictypeaccess.array.ByteArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ByteArray>>
final Cells< ByteArray, AbstractCell< ByteArray > > cells = cellImg.getCells();
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java:338: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedByteType,net.imglib2.img.basictypeaccess.array.ByteArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ByteArray>>
final Cells< ByteArray, AbstractCell< ByteArray > > cells = cellImg.getCells();
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
9 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:444)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:375)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:398)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:375)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:398)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Build step 'Execute shell' marked build as failure
Archiving artifacts
More information about the ImageJ-builds
mailing list