[ImageJ-builds] Build failed in Jenkins: fiji-core #747
Jenkins Daemon
jenkins at qa.nest-initiative.org
Tue Apr 30 17:12:22 CDT 2013
See <https://qa.nest-initiative.org/job/fiji-core/747/changes>
Changes:
[stephan.preibisch] can wrap cellimg from imglib2 to imglib1
------------------------------------------
Started by remote host 144.92.48.145
Building remotely on fc-18-i386-7 in workspace <https://qa.nest-initiative.org/job/fiji-core/ws/>
Checkout:fiji-core / <https://qa.nest-initiative.org/job/fiji-core/ws/> - hudson.remoting.Channel at 4ca49360:fc-18-i386-7
Using strategy: Default
Last Built Revision: Revision 77155d2c2e64f18ed2296e3cfb05c0df195743cf (origin/master)
Fetching changes from 1 remote Git repository
Fetching upstream changes from origin
Commencing build of Revision 4f89983a41efb8ad788caf324bd2097f7f2eb8db (origin/master)
Checking out Revision 4f89983a41efb8ad788caf324bd2097f7f2eb8db (origin/master)
Cleaning workspace
Resetting working tree
[fiji-core] $ /bin/bash /tmp/hudson6524613505896002615.sh
+ ./Build.sh -Dminimaven.updateinterval=1 -- verbose=true
Downloading sc.fiji:javac:2.0.0-SNAPSHOT
Downloading net.imagej:ij-minimaven:2.0.0-SNAPSHOT
Downloading net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Compiling 26 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 22 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization>
Compiling 190 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 371 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1>
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:50: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.real.FloatType,net.imglib2.img.basictypeaccess.array.FloatArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.FloatArray>>
final Cells< FloatArray, AbstractCell< FloatArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:86: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.real.DoubleType,net.imglib2.img.basictypeaccess.array.DoubleArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.DoubleArray>>
final Cells< DoubleArray, AbstractCell< DoubleArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:122: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.LongType,net.imglib2.img.basictypeaccess.array.LongArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.LongArray>>
final Cells< LongArray, AbstractCell< LongArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:158: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.IntType,net.imglib2.img.basictypeaccess.array.IntArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.IntArray>>
final Cells< IntArray, AbstractCell< IntArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:194: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedIntType,net.imglib2.img.basictypeaccess.array.IntArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.IntArray>>
final Cells< IntArray, AbstractCell< IntArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:230: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.ShortType,net.imglib2.img.basictypeaccess.array.ShortArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ShortArray>>
final Cells< ShortArray, AbstractCell< ShortArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:266: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedShortType,net.imglib2.img.basictypeaccess.array.ShortArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ShortArray>>
final Cells< ShortArray, AbstractCell< ShortArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:302: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.ByteType,net.imglib2.img.basictypeaccess.array.ByteArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ByteArray>>
final Cells< ByteArray, AbstractCell< ByteArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:338: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedByteType,net.imglib2.img.basictypeaccess.array.ByteArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ByteArray>>
final Cells< ByteArray, AbstractCell< ByteArray > > cells = cellImg.getCells();
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
9 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:444)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:375)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:398)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:375)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:398)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Compiling 371 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1>
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:50: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.real.FloatType,net.imglib2.img.basictypeaccess.array.FloatArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.FloatArray>>
final Cells< FloatArray, AbstractCell< FloatArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:86: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.real.DoubleType,net.imglib2.img.basictypeaccess.array.DoubleArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.DoubleArray>>
final Cells< DoubleArray, AbstractCell< DoubleArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:122: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.LongType,net.imglib2.img.basictypeaccess.array.LongArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.LongArray>>
final Cells< LongArray, AbstractCell< LongArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:158: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.IntType,net.imglib2.img.basictypeaccess.array.IntArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.IntArray>>
final Cells< IntArray, AbstractCell< IntArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:194: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedIntType,net.imglib2.img.basictypeaccess.array.IntArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.IntArray>>
final Cells< IntArray, AbstractCell< IntArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:230: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.ShortType,net.imglib2.img.basictypeaccess.array.ShortArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ShortArray>>
final Cells< ShortArray, AbstractCell< ShortArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:266: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedShortType,net.imglib2.img.basictypeaccess.array.ShortArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ShortArray>>
final Cells< ShortArray, AbstractCell< ShortArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:302: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.ByteType,net.imglib2.img.basictypeaccess.array.ByteArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ByteArray>>
final Cells< ByteArray, AbstractCell< ByteArray > > cells = cellImg.getCells();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/wrapper/ImgLib2.java>:338: cannot find symbol
symbol : method getCells()
location: class net.imglib2.img.cell.CellImg<net.imglib2.type.numeric.integer.UnsignedByteType,net.imglib2.img.basictypeaccess.array.ByteArray,net.imglib2.img.cell.AbstractCell<net.imglib2.img.basictypeaccess.array.ByteArray>>
final Cells< ByteArray, AbstractCell< ByteArray > > cells = cellImg.getCells();
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
9 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:444)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:375)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:398)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:375)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:398)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Build step 'Execute shell' marked build as failure
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