[ImageJ-builds] Build failed in Jenkins: fiji-core #388
Jenkins Daemon
jenkins at qa.nest-initiative.org
Tue Jul 3 23:02:00 CDT 2012
See <https://qa.nest-initiative.org/job/fiji-core/388/>
------------------------------------------
[...truncated 1932 lines...]
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at java.net.URL.openStream(URL.java:1010)
at fiji.build.MiniMaven.download(MiniMaven.java:1355)
at fiji.build.MiniMaven.downloadAndVerify(MiniMaven.java:1176)
at fiji.build.MiniMaven.downloadAndVerify(MiniMaven.java:1134)
at fiji.build.MiniMaven$POM.download(MiniMaven.java:361)
at fiji.build.MiniMaven$POM.maybeDownloadAutomatically(MiniMaven.java:909)
at fiji.build.MiniMaven$POM.findPOM(MiniMaven.java:817)
at fiji.build.MiniMaven$POM.getDependencies(MiniMaven.java:640)
at fiji.build.MiniMaven$POM.getDependencies(MiniMaven.java:609)
at fiji.build.MiniMaven$POM.downloadDependencies(MiniMaven.java:345)
at fiji.build.SubFake.action(SubFake.java:162)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:331)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:265)
at fiji.build.Fake.main(Fake.java:55)
Trying to download http://repo1.maven.org/maven2//mpicbg/mpicbg/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://repo1.maven.org/maven2//mpicbg/mpicbg/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at java.net.URL.openStream(URL.java:1010)
at fiji.build.MiniMaven.download(MiniMaven.java:1355)
at fiji.build.MiniMaven.downloadAndVerify(MiniMaven.java:1176)
at fiji.build.MiniMaven.downloadAndVerify(MiniMaven.java:1134)
at fiji.build.MiniMaven$POM.download(MiniMaven.java:361)
at fiji.build.MiniMaven$POM.maybeDownloadAutomatically(MiniMaven.java:909)
at fiji.build.MiniMaven$POM.findPOM(MiniMaven.java:817)
at fiji.build.MiniMaven$POM.getDependencies(MiniMaven.java:640)
at fiji.build.MiniMaven$POM.getDependencies(MiniMaven.java:609)
at fiji.build.MiniMaven$POM.downloadDependencies(MiniMaven.java:345)
at fiji.build.SubFake.action(SubFake.java:162)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:331)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:265)
at fiji.build.Fake.main(Fake.java:55)
java.io.FileNotFoundException: Could not download mpicbg-2.0.0-SNAPSHOT.jar
at fiji.build.MiniMaven$POM.download(MiniMaven.java:367)
at fiji.build.MiniMaven$POM.maybeDownloadAutomatically(MiniMaven.java:909)
at fiji.build.MiniMaven$POM.findPOM(MiniMaven.java:817)
at fiji.build.MiniMaven$POM.getDependencies(MiniMaven.java:640)
at fiji.build.MiniMaven$POM.getDependencies(MiniMaven.java:609)
at fiji.build.MiniMaven$POM.downloadDependencies(MiniMaven.java:345)
at fiji.build.SubFake.action(SubFake.java:162)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:331)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:265)
at fiji.build.Fake.main(Fake.java:55)
Could not download mpicbg: Could not download mpicbg-2.0.0-SNAPSHOT.jar
Skipping artifact TrakEM2_ (for register_virtual_stack_slices): not found
Trying to download http://dev.loci.wisc.edu/maven2/releases/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at java.net.URL.openStream(URL.java:1010)
at fiji.build.MiniMaven.download(MiniMaven.java:1355)
at fiji.build.MiniMaven.downloadAndVerify(MiniMaven.java:1176)
at fiji.build.MiniMaven.downloadAndVerify(MiniMaven.java:1134)
at fiji.build.MiniMaven$POM.download(MiniMaven.java:361)
at fiji.build.MiniMaven$POM.maybeDownloadAutomatically(MiniMaven.java:909)
at fiji.build.MiniMaven$POM.findPOM(MiniMaven.java:817)
at fiji.build.MiniMaven$POM.getDependencies(MiniMaven.java:640)
at fiji.build.MiniMaven$POM.getDependencies(MiniMaven.java:609)
at fiji.build.MiniMaven$POM.downloadDependencies(MiniMaven.java:345)
at fiji.build.SubFake.action(SubFake.java:162)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:331)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:265)
at fiji.build.Fake.main(Fake.java:55)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of TrakEM2_
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.pom.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.pom
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.jar.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.jar
Downloading TrakEM2_
Parsing /home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.pom
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/target/classes,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java,> <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Transform_Virtual_Stack_MT.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/sc/fiji/TrakEM2_/2.0.0-SNAPSHOT/TrakEM2_-2.0.0-20120704.040143-1.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/target/classes>:<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/net/imagej/ij/1.46r/ij-1.46r.jar:<https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:35: package mpicbg.ij does not exist
import mpicbg.ij.FeatureTransform;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:36: package mpicbg.ij does not exist
import mpicbg.ij.SIFT;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:37: package mpicbg.ij.util does not exist
import mpicbg.ij.util.Util;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:38: package mpicbg.imagefeatures does not exist
import mpicbg.imagefeatures.*;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:41: package mpicbg.models does not exist
import mpicbg.models.Model;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:42: package mpicbg.models does not exist
import mpicbg.models.NotEnoughDataPointsException;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:43: package mpicbg.models does not exist
import mpicbg.models.Point;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:44: package mpicbg.models does not exist
import mpicbg.models.PointMatch;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:690: cannot find symbol
symbol : class PointMatch
location: class register_virtual_stack.Register_Virtual_Stack_MT
List<PointMatch> list,
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:689: cannot find symbol
symbol : class PointMatch
location: class register_virtual_stack.Register_Virtual_Stack_MT
public static List<PointMatch> applyTransformReverse(
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:713: cannot find symbol
symbol : class PointMatch
location: class register_virtual_stack.Register_Virtual_Stack_MT
List<PointMatch>[] inliers,
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:1440: cannot find symbol
symbol : class Feature
location: class register_virtual_stack.Register_Virtual_Stack_MT
private static Callable<ArrayList<Feature>> extractFeatures(final Param p, final ImageProcessor ip) {
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:1459: cannot find symbol
symbol : class Feature
location: class register_virtual_stack.Register_Virtual_Stack_MT
private static Callable<ArrayList<Feature>> extractFeatures(final Param p, final String path, final int index) {
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:1554: cannot find symbol
symbol : class Feature
location: class register_virtual_stack.Register_Virtual_Stack_MT
final Collection<Feature> fs2,
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:1555: cannot find symbol
symbol : class Feature
location: class register_virtual_stack.Register_Virtual_Stack_MT
final Collection<Feature> fs1,
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:1556: cannot find symbol
symbol : class Model
location: class register_virtual_stack.Register_Virtual_Stack_MT
final Model<?> featuresModel ) throws Exception
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:1552: cannot find symbol
symbol : class PointMatch
location: class register_virtual_stack.Register_Virtual_Stack_MT
private static Callable<ArrayList<PointMatch>> matchFeatures(
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:1834: cannot find symbol
symbol : class PointMatch
location: class register_virtual_stack.Register_Virtual_Stack_MT
public static void fitInliers(Param p, CoordinateTransform t, List< PointMatch > inliers) throws Exception
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:373: package FloatArray2DSIFT does not exist
public final FloatArray2DSIFT.Param sift = new FloatArray2DSIFT.Param();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:373: package FloatArray2DSIFT does not exist
public final FloatArray2DSIFT.Param sift = new FloatArray2DSIFT.Param();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:507: cannot find symbol
symbol : class Model
location: class register_virtual_stack.Register_Virtual_Stack_MT
Model< ? > featuresModel;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:511: cannot access mpicbg.models.TranslationModel2D
class file for mpicbg.models.TranslationModel2D not found
featuresModel = new TranslationModel2D();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:514: cannot access mpicbg.models.RigidModel2D
class file for mpicbg.models.RigidModel2D not found
featuresModel = new RigidModel2D();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:517: cannot access mpicbg.models.SimilarityModel2D
class file for mpicbg.models.SimilarityModel2D not found
featuresModel = new SimilarityModel2D();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:520: cannot access mpicbg.models.AffineModel2D
class file for mpicbg.models.AffineModel2D not found
featuresModel = new AffineModel2D();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:528: cannot find symbol
symbol : class PointMatch
location: class register_virtual_stack.Register_Virtual_Stack_MT
List< PointMatch >[] inliers = new ArrayList [sorted_file_names.length-1];
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:535: cannot access mpicbg.models.InvertibleCoordinateTransform
class file for mpicbg.models.InvertibleCoordinateTransform not found
transform[0] = new RigidModel2D();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:538: cannot find symbol
symbol : class Feature
location: class register_virtual_stack.Register_Virtual_Stack_MT
ArrayList<Feature>[] fs = new ArrayList[sorted_file_names.length];
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:539: cannot find symbol
symbol : class Feature
location: class register_virtual_stack.Register_Virtual_Stack_MT
Future<ArrayList<Feature>> fu[] = new Future[sorted_file_names.length];
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:565: cannot find symbol
symbol : class PointMatch
location: class register_virtual_stack.Register_Virtual_Stack_MT
final Future<ArrayList<PointMatch>>[] fpm = new Future[sorted_file_names.length-1];
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/register_virtual_stack_slices/src/main/java/register_virtual_stack/Register_Virtual_Stack_MT.java>:578: cannot find symbol
symbol : class NotEnoughDataPointsException
location: class register_virtual_stack.Register_Virtual_Stack_MT
catch ( NotEnoughDataPointsException e )
^
Compile error
at fiji.build.Fake.callJavac(Fake.java:554)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:477)
at fiji.build.MiniMaven$POM.buildJar(MiniMaven.java:408)
at fiji.build.SubFake.action(SubFake.java:163)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:331)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:265)
at fiji.build.Fake.main(Fake.java:55)
Compile error
at fiji.build.Fake.callJavac(Fake.java:554)
at fiji.build.MiniMaven$POM.build(MiniMaven.java:477)
at fiji.build.MiniMaven$POM.buildJar(MiniMaven.java:408)
at fiji.build.SubFake.action(SubFake.java:163)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:331)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:265)
at fiji.build.Fake.main(Fake.java:55)
Compile error
in rule (fiji.build.SubFake) plugins/register_virtual_stack_slice...
in rule (fiji.build.All) all <- ImageJ fiji jars/ij.jar plugins/l...
Build step 'Execute shell' marked build as failure
Archiving artifacts
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