[ImageJ-builds] Build failed in Jenkins: fiji-windows-full #146

Jenkins Daemon jenkins at qa.nest-initiative.org
Mon Aug 27 14:28:13 CDT 2012 

See <https://qa.nest-initiative.org/job/fiji-windows-full/146/changes>

Changes:

[johannes.schindelin] MiniMaven: download dependencies automatically by default

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[...truncated 80 lines...]
Entering 'modules/mpicbg'
HEAD is now at 4200032 simplify and hopefully speedup integral image constructors---not benchmarked yet
Entering 'modules/tcljava'
HEAD is now at 20ab053 add 1.4.1 release note about Tcl Blend binary package
Entering 'modules/weka'
HEAD is now at 4f6b274 Added a toString() method to the OLMRules inner class to print out the instances in the rule set.
+ git submodule init
Submodule 'java/linux' () registered for path 'java/linux'
Submodule 'java/linux-amd64' () registered for path 'java/linux-amd64'
Submodule 'java/macosx-java3d' () registered for path 'java/macosx-java3d'
Submodule 'java/win32' () registered for path 'java/win32'
Submodule 'java/win64' () registered for path 'java/win64'
Submodule 'AutoComplete' () registered for path 'modules/AutoComplete'
Submodule 'ImageJA' () registered for path 'modules/ImageJA'
Submodule 'RSyntaxTextArea' () registered for path 'modules/RSyntaxTextArea'
Submodule 'Retrotranslator' () registered for path 'modules/Retrotranslator'
Submodule 'TrakEM2' () registered for path 'modules/TrakEM2'
Submodule 'batik' () registered for path 'modules/batik'
Submodule 'bio-formats' () registered for path 'modules/bio-formats'
Submodule 'clojure' () registered for path 'modules/clojure'
Submodule 'commons-math' () registered for path 'modules/commons-math'
Submodule 'ij-plugins' () registered for path 'modules/ij-plugins'
Submodule 'modules/imagej5d' () registered for path 'modules/image5d'
Submodule 'modules/imagej2' () registered for path 'modules/imagej2'
Submodule 'imglib' () registered for path 'modules/imglib'
Submodule 'modules/javassist' () registered for path 'modules/javassist'
Submodule 'jsch' () registered for path 'modules/jsch'
Submodule 'junit' () registered for path 'modules/junit'
Submodule 'jython' () registered for path 'modules/jython'
Submodule 'mpicbg' () registered for path 'modules/mpicbg'
Submodule 'tcljava' () registered for path 'modules/tcljava'
Submodule 'weka' () registered for path 'modules/weka'
+ git submodule sync
Synchronizing submodule url for 'java/linux'
Synchronizing submodule url for 'java/linux-amd64'
Synchronizing submodule url for 'java/macosx-java3d'
Synchronizing submodule url for 'java/win32'
Synchronizing submodule url for 'java/win64'
Synchronizing submodule url for 'AutoComplete'
Synchronizing submodule url for 'ImageJA'
Synchronizing submodule url for 'RSyntaxTextArea'
Synchronizing submodule url for 'Retrotranslator'
Synchronizing submodule url for 'TrakEM2'
Synchronizing submodule url for 'batik'
Synchronizing submodule url for 'bio-formats'
Synchronizing submodule url for 'clojure'
Synchronizing submodule url for 'commons-math'
Synchronizing submodule url for 'ij-plugins'
Synchronizing submodule url for 'modules/imagej5d'
Synchronizing submodule url for 'modules/imagej2'
Synchronizing submodule url for 'imglib'
Synchronizing submodule url for 'modules/javassist'
Synchronizing submodule url for 'jsch'
Synchronizing submodule url for 'junit'
Synchronizing submodule url for 'jython'
Synchronizing submodule url for 'mpicbg'
Synchronizing submodule url for 'tcljava'
Synchronizing submodule url for 'weka'
++ git ls-files --stage
++ sed -n 's/^160000 .\{40\} 0.//p'
++ grep -v java/
+ SUBMODULES='modules/AutoComplete
modules/ImageJA
modules/RSyntaxTextArea
modules/Retrotranslator
modules/TrakEM2
modules/batik
modules/bio-formats
modules/clojure
modules/commons-math
modules/ij-plugins
modules/image5d
modules/imagej2
modules/imglib
modules/javassist
modules/jsch
modules/junit
modules/jython
modules/mpicbg
modules/tcljava
modules/weka'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/AutoComplete
Submodule 'AutoComplete' () registered for path 'modules/AutoComplete'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/ImageJA
Submodule 'ImageJA' () registered for path 'modules/ImageJA'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/RSyntaxTextArea
Submodule 'RSyntaxTextArea' () registered for path 'modules/RSyntaxTextArea'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/Retrotranslator
Submodule 'Retrotranslator' () registered for path 'modules/Retrotranslator'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/TrakEM2
Submodule 'TrakEM2' () registered for path 'modules/TrakEM2'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/batik
Submodule 'batik' () registered for path 'modules/batik'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/bio-formats
Submodule 'bio-formats' () registered for path 'modules/bio-formats'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/clojure
Submodule 'clojure' () registered for path 'modules/clojure'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/commons-math
Submodule 'commons-math' () registered for path 'modules/commons-math'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/ij-plugins
Submodule 'ij-plugins' () registered for path 'modules/ij-plugins'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/image5d
Submodule 'modules/imagej5d' () registered for path 'modules/image5d'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/imagej2
Submodule 'modules/imagej2' () registered for path 'modules/imagej2'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/imglib
Submodule 'imglib' () registered for path 'modules/imglib'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/javassist
Submodule 'modules/javassist' () registered for path 'modules/javassist'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/jsch
Submodule 'jsch' () registered for path 'modules/jsch'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/junit
Submodule 'junit' () registered for path 'modules/junit'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/jython
Submodule 'jython' () registered for path 'modules/jython'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/mpicbg
Submodule 'mpicbg' () registered for path 'modules/mpicbg'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/tcljava
Submodule 'tcljava' () registered for path 'modules/tcljava'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/weka
Submodule 'weka' () registered for path 'modules/weka'
+ git submodule foreach 'git clean -dfx'
Entering 'java/win64'
Entering 'modules/AutoComplete'
Entering 'modules/ImageJA'
Entering 'modules/RSyntaxTextArea'
Entering 'modules/Retrotranslator'
Entering 'modules/TrakEM2'
Entering 'modules/batik'
Entering 'modules/bio-formats'
Entering 'modules/clojure'
Entering 'modules/commons-math'
Entering 'modules/ij-plugins'
Entering 'modules/image5d'
Entering 'modules/imagej2'
Entering 'modules/imglib'
Entering 'modules/javassist'
Entering 'modules/jsch'
Entering 'modules/junit'
Entering 'modules/jython'
Entering 'modules/mpicbg'
Entering 'modules/tcljava'
Entering 'modules/weka'
[fiji-windows-full] $ sh -xe C:\Users\jenkins\AppData\Local\Temp\hudson6520262253516607082.sh
+ export PATH=/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
+ PATH=/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
+ sh -x ./Build.sh -Dminimaven.updateinterval=1 -- verbose=true
+ set -a
++ dirname ./Build.sh
+ CWD=.
++ sed -n 's/^.<version>\(.*\)<\/version>.*/\1/p'
+ VERSION=2.0.0-SNAPSHOT
+ FAKE_JAR=jars/fake-2.0.0-SNAPSHOT.jar
+ PATHSEP=:
++ uname -s
+ UNAME_S=MINGW32_NT-6.1
+ case "$UNAME_S" in
++ cd .
++ pwd
+ CWD=/c/jenkins/workspace/fiji-windows-full
+ PATHSEP=';'
+ case "$PROCESSOR_ARCHITEW6432" in
+ platform=win64
+ java_submodule=win64
+ exe=.exe
+ test -n win64
+ test -z ''
++ get_java_home
++ test -d ''
++ test -n win64
++ test -d /c/jenkins/workspace/fiji-windows-full/java/win64
+++ ls -t /c/jenkins/workspace/fiji-windows-full/java/win64
+++ head -n 1
++ echo /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ JAVA_HOME=/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ test -z win64
+ test -f /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/lib/tools.jar
+ test -f /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/../lib/tools.jar
+ case "$JAVA_HOME" in
+ test -n /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ test -d /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ test -d /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ test -d /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/jre
+ export PATH=/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/bin:/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
+ PATH=/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/bin:/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
+ : build fake.jar, making sure javac is in the PATH
++ get_java_home
++ test -d /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
++ echo /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
++ get_java_home
++ test -d /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
++ echo /c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre
+ PATH=/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/bin:/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin:/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/bin:/c/jenkins/workspace/fiji-windows-full/java/win64/jdk1.6.0_24/jre/../bin
+ ensure_fake_is_built
++ need_to_build_fake
++ cd /c/jenkins/workspace/fiji-windows-full
++ test -f jars/fake-2.0.0-SNAPSHOT.jar
++ echo YesPlease
++ return
++ return
+ test -z YesPlease
+ cd /c/jenkins/workspace/fiji-windows-full
+ : blow previous builds away
+ rm -f jars/fake.jar
+ rm -rf src-plugins/fake/target/classes
+ mkdir -p src-plugins/fake/target/classes
+ : compile classes
++ find src-plugins/fake/ -name '*.java'
+ java -jar precompiled/javac.jar -source 1.5 -target 1.5 -classpath precompiled/javac.jar -d src-plugins/fake/target/classes src-plugins/fake/src/main/java/fiji/build/All.java src-plugins/fake/src/main/java/fiji/build/ByteCodeAnalyzer.java src-plugins/fake/src/main/java/fiji/build/CompileClass.java src-plugins/fake/src/main/java/fiji/build/CompileCProgram.java src-plugins/fake/src/main/java/fiji/build/CompileJar.java src-plugins/fake/src/main/java/fiji/build/CompileNativeLibrary.java src-plugins/fake/src/main/java/fiji/build/CopyJar.java src-plugins/fake/src/main/java/fiji/build/ExecuteProgram.java src-plugins/fake/src/main/java/fiji/build/Fake.java src-plugins/fake/src/main/java/fiji/build/FakeException.java src-plugins/fake/src/main/java/fiji/build/GlobFilter.java src-plugins/fake/src/main/java/fiji/build/minimaven/BuildEnvironment.java src-plugins/fake/src/main/java/fiji/build/minimaven/Coordinate.java src-plugins/fake/src/main/java/fiji/build/minimaven/JarClassLoader.java src-plugins/fake/src/main/java/fiji/build/minimaven/JavaCompiler.java src-plugins/fake/src/main/java/fiji/build/minimaven/POM.java src-plugins/fake/src/main/java/fiji/build/minimaven/ReadInto.java src-plugins/fake/src/main/java/fiji/build/minimaven/SnapshotPOMHandler.java src-plugins/fake/src/main/java/fiji/build/minimaven/VersionPOMHandler.java src-plugins/fake/src/main/java/fiji/build/MiniMaven.java src-plugins/fake/src/main/java/fiji/build/MultiIterable.java src-plugins/fake/src/main/java/fiji/build/ObsoleteClassFiles.java src-plugins/fake/src/main/java/fiji/build/ParallelMaker.java src-plugins/fake/src/main/java/fiji/build/Parser.java src-plugins/fake/src/main/java/fiji/build/Rule.java src-plugins/fake/src/main/java/fiji/build/Special.java src-plugins/fake/src/main/java/fiji/build/StreamDumper.java src-plugins/fake/src/main/java/fiji/build/SubFake.java src-plugins/fake/src/main/java/fiji/build/Util.java
+ : compile .jar using MiniMaven
+ cd src-plugins
+ java -Dij.dir=/c/jenkins/workspace/fiji-windows-full/.. -classpath 'fake/target/classes;../precompiled/javac.jar' -DartifactId=fake fiji.build.MiniMaven jar
Compiling 29 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\fake
No javac.jar found (looked in <https://qa.nest-initiative.org/job/fiji-windows-full/ws/..)!>
java.lang.NullPointerException
	at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:26)
	at fiji.build.minimaven.POM.build(POM.java:253)
	at fiji.build.minimaven.POM.buildJar(POM.java:194)
	at fiji.build.MiniMaven.main(MiniMaven.java:69)
Could not find javac java.lang.NullPointerException, falling back to system javac
Exception in thread "main" java.lang.RuntimeException: Could not even fall back  to javac in the PATH
	at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:57)
	at fiji.build.minimaven.POM.build(POM.java:253)
	at fiji.build.minimaven.POM.buildJar(POM.java:194)
	at fiji.build.MiniMaven.main(MiniMaven.java:69)
+ echo 'Could not build Fiji Build'
Could not build Fiji Build
+ exit 1
Build step 'Execute shell' marked build as failure

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