[ImageJ-bugs] [Bug 1231] New: Local Thickness fails to produce final output

bugzilla at fiji.sc bugzilla at fiji.sc
Tue Feb 23 08:13:48 CST 2016


http://fiji.sc/bugzilla/show_bug.cgi?id=1231

            Bug ID: 1231
           Summary: Local Thickness fails to produce final output
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: kaleda at hot.ee
                CC: kaleda at hot.ee

This macro will produce final output only once:

for (y=0;y<8;y++)
{
run("Leaf (36K)");
run("Duplicate...", " ");
selectWindow("leaf-1.jpg");
run("8-bit");
run("Local Thickness (complete process)", "threshold=100 inverse");
close();
close();
close();
}

Second time (sometimes on the first try already after Fiji restart) it will
throw an error:
"Local Thickness to Cleaned-Up Local Thickness" requires an image of type:
32-bit (float) grayscale"

If Local Thickness to Cleaned-Up Local Thickness selected manually from menu
and applied to leaf-1_EDT_DR_LT image, it will work (but not always).

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.8.0_66
  java.vendor => Oracle Corporation
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.8.0_66-b18
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 25.66-b18
  java.vm.vendor => Oracle Corporation
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.8
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to:
C:\Users\bras-lab\DOCUME~1\Victor\Fiji.app/java/win64/jdk1.8.0_66//jre
  imagej.dir => C:\Users\bras-lab\DOCUME~1\Victor\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20160217170804)
Fiji: http://update.fiji.sc/ (last check:20160218155537)
Java-8: http://sites.imagej.net/Java-8/ (last check:20160127225850)
Biomedgroup: http://sites.imagej.net/Biomedgroup/ (last check:20160222171815)
BioVoxxel: http://sites.imagej.net/BioVoxxel/ (last check:20160131192112)
MOSAIC ToolSuite:
http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/ (last
check:20160105155554)

Files not up-to-date:
  9277151f (LOCAL_ONLY) 20160214093038 plugins/Watch_Dir.jar

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