[ImageJ-bugs] [Bug 1231] New: Local Thickness fails to produce final output
bugzilla at fiji.sc
bugzilla at fiji.sc
Tue Feb 23 08:13:48 CST 2016
http://fiji.sc/bugzilla/show_bug.cgi?id=1231
Bug ID: 1231
Summary: Local Thickness fails to produce final output
Product: Fiji
Version: unspecified
Hardware: PC
OS: Windows
Status: NEW
Severity: normal
Priority: P4
Component: Plugins
Assignee: imagej-bugs at imagej.net
Reporter: kaleda at hot.ee
CC: kaleda at hot.ee
This macro will produce final output only once:
for (y=0;y<8;y++)
{
run("Leaf (36K)");
run("Duplicate...", " ");
selectWindow("leaf-1.jpg");
run("8-bit");
run("Local Thickness (complete process)", "threshold=100 inverse");
close();
close();
close();
}
Second time (sometimes on the first try already after Fiji restart) it will
throw an error:
"Local Thickness to Cleaned-Up Local Thickness" requires an image of type:
32-bit (float) grayscale"
If Local Thickness to Cleaned-Up Local Thickness selected manually from menu
and applied to leaf-1_EDT_DR_LT image, it will work (but not always).
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.8.0_66
java.vendor => Oracle Corporation
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.8.0_66-b18
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 25.66-b18
java.vm.vendor => Oracle Corporation
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.8
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
C:\Users\bras-lab\DOCUME~1\Victor\Fiji.app/java/win64/jdk1.8.0_66//jre
imagej.dir => C:\Users\bras-lab\DOCUME~1\Victor\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20160217170804)
Fiji: http://update.fiji.sc/ (last check:20160218155537)
Java-8: http://sites.imagej.net/Java-8/ (last check:20160127225850)
Biomedgroup: http://sites.imagej.net/Biomedgroup/ (last check:20160222171815)
BioVoxxel: http://sites.imagej.net/BioVoxxel/ (last check:20160131192112)
MOSAIC ToolSuite:
http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/ (last
check:20160105155554)
Files not up-to-date:
9277151f (LOCAL_ONLY) 20160214093038 plugins/Watch_Dir.jar
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