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<head>
<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Local Thickness fails to produce final output"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1231">1231</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Local Thickness fails to produce final output
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>kaleda@hot.ee
</td>
</tr>
<tr>
<th>CC</th>
<td>kaleda@hot.ee
</td>
</tr></table>
<p>
<div>
<pre>This macro will produce final output only once:
for (y=0;y<8;y++)
{
run("Leaf (36K)");
run("Duplicate...", " ");
selectWindow("leaf-1.jpg");
run("8-bit");
run("Local Thickness (complete process)", "threshold=100 inverse");
close();
close();
close();
}
Second time (sometimes on the first try already after Fiji restart) it will
throw an error:
"Local Thickness to Cleaned-Up Local Thickness" requires an image of type:
32-bit (float) grayscale"
If Local Thickness to Cleaned-Up Local Thickness selected manually from menu
and applied to leaf-1_EDT_DR_LT image, it will work (but not always).
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.8.0_66
java.vendor => Oracle Corporation
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.8.0_66-b18
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 25.66-b18
java.vm.vendor => Oracle Corporation
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.8
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
C:\Users\bras-lab\DOCUME~1\Victor\Fiji.app/java/win64/jdk1.8.0_66//jre
imagej.dir => C:\Users\bras-lab\DOCUME~1\Victor\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20160217170804)
Fiji: <a href="http://update.fiji.sc/">http://update.fiji.sc/</a> (last check:20160218155537)
Java-8: <a href="http://sites.imagej.net/Java-8/">http://sites.imagej.net/Java-8/</a> (last check:20160127225850)
Biomedgroup: <a href="http://sites.imagej.net/Biomedgroup/">http://sites.imagej.net/Biomedgroup/</a> (last check:20160222171815)
BioVoxxel: <a href="http://sites.imagej.net/BioVoxxel/">http://sites.imagej.net/BioVoxxel/</a> (last check:20160131192112)
MOSAIC ToolSuite:
<a href="http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/">http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/</a> (last
check:20160105155554)
Files not up-to-date:
9277151f (LOCAL_ONLY) 20160214093038 plugins/Watch_Dir.jar</pre>
</div>
</p>
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