[ImageJ-bugs] [Bug 1072] New: Fails to recognize different channels in TIFF file

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=1072

            Bug ID: 1072
           Summary: Fails to recognize different channels in TIFF file
           Product: Fiji
           Version: unspecified
          Hardware: Macintosh
                OS: Mac OS
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: jstitlow at gmail.com
                CC: jstitlow at gmail.com

I suspect this is similar to a previously fixed bug: 

1.49m 24 November 2014
Fixed a bug that caused ImageJ to incorrectly read 3 and 4 channel 16-bit
planar TIFFs.

Happened after updating to version 2.0.0rc-30/1.49s

TIFF file is opened as a single stack instead of 4 separate channels.

Many thanks!
J

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.10.2
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-466.1-11M4716
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-466.1
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150501194914)
Fiji: http://fiji.sc/update/ (last check:20150509234919)
GDSC: http://sites.imagej.net/GDSC/ (last check:20150421144620)

Files not up-to-date:
  6f9698ab (MODIFIED) 20150518184848 Contents/Info.plist
  1ad3be0d (LOCAL_ONLY) 20140611184202 jars/jpedalSTD.jar
  b3f81c9d (LOCAL_ONLY) 20150505002554 macros/FISH_FOCI.ijm
  65cd0d4e (LOCAL_ONLY) 20141115142556 macros/Fluorescence.ijm
  e7c1a0b1 (LOCAL_ONLY) 20141130013502 macros/Fluorescence_paricles.ijm
  1d1902ff (LOCAL_ONLY) 20150406105527 macros/TranscriptionFoci.ijm
  da46686b (LOCAL_ONLY) 20141130132708 macros/particlecounter.ijm
  61fa7106 (LOCAL_ONLY) 20141130012659 plugins/Entropy_Threshold.class
  404c9259 (LOCAL_ONLY) 20141130010600 plugins/ICTN_.jar
  946ffba8 (LOCAL_ONLY) 20140801002555 plugins/MultipleKymograph_.class
  54d2cdf2 (LOCAL_ONLY) 20140801002857 plugins/MultipleOverlay_.class
  bee0253d (LOCAL_ONLY) 20141115122248 plugins/Normalize_.class
  ccce92e9 (LOCAL_ONLY) 20081202184414 plugins/Nucleus_Counter.class
  bf8660d2 (LOCAL_ONLY) 20140801002930 plugins/StackDifference_.class
  203df37a (LOCAL_ONLY) 20140719221758 plugins/Time_Series_Analyzer.jar
  d3721d57 (LOCAL_ONLY) 20140801002941 plugins/WalkingAverage_.class

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