[ImageJ-bugs] [Bug 1066] New: Analyze particles works on a two-color composite but not on a single image

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=1066

            Bug ID: 1066
           Summary: Analyze particles works on a two-color composite but
                    not on a single image
           Product: Fiji
           Version: unspecified
          Hardware: Macintosh
                OS: Mac OS
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: jcf14 at cornell.edu
                CC: jcf14 at cornell.edu

I am using "Analyze particles" to create ROIs on an auto-thresholded image (I
will try to upload the image).  It works well when the image is a two-color
composite (but just thresholding and analyzing particles in one color). 
However, if I split the two-color composite into individual single-color
images, the same exact process yields only one ROI, and the ROI is the size of
the entire image.

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.6.8
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-462-10M4609
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-462
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Applications/ImageJ/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150501144914)
Fiji: http://fiji.sc/update/ (last check:20150507160342)
3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20150427062945)
Bio-Formats: http://sites.imagej.net/Bio-Formats/ (last check:20150507212642)
Cookbook: http://sites.imagej.net/Cookbook/ (last check:20150302170629)

Files not up-to-date:
  5ffb7d0f (OBSOLETE_UNINSTALLED) 20150413112913 jars/bio-formats/ome-jxr.jar
  d2af3ac9 (OBSOLETE_UNINSTALLED) 20150319162909 jars/kryo-2.21-shaded.jar

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