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<base href="http://fiji.sc/bugzilla/" />
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Analyze particles works on a two-color composite but not on a single image"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1066">1066</a>
</td>
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<th>Summary</th>
<td>Analyze particles works on a two-color composite but not on a single image
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
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<th>OS</th>
<td>Mac OS
</td>
</tr>
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<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
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<th>Priority</th>
<td>P4
</td>
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<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>jcf14@cornell.edu
</td>
</tr>
<tr>
<th>CC</th>
<td>jcf14@cornell.edu
</td>
</tr></table>
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<div>
<pre>I am using "Analyze particles" to create ROIs on an auto-thresholded image (I
will try to upload the image). It works well when the image is a two-color
composite (but just thresholding and analyzing particles in one color).
However, if I split the two-color composite into individual single-color
images, the same exact process yields only one ROI, and the ROI is the size of
the entire image.
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.6.8
java.version => 1.6.0_65
java.vendor => Apple Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_65-b14-462-10M4609
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 20.65-b04-462
java.vm.vendor => Apple Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: null
imagej.dir => /Applications/ImageJ/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150501144914)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20150507160342)
3D ImageJ Suite: <a href="http://sites.imagej.net/Tboudier/">http://sites.imagej.net/Tboudier/</a> (last check:20150427062945)
Bio-Formats: <a href="http://sites.imagej.net/Bio-Formats/">http://sites.imagej.net/Bio-Formats/</a> (last check:20150507212642)
Cookbook: <a href="http://sites.imagej.net/Cookbook/">http://sites.imagej.net/Cookbook/</a> (last check:20150302170629)
Files not up-to-date:
5ffb7d0f (OBSOLETE_UNINSTALLED) 20150413112913 jars/bio-formats/ome-jxr.jar
d2af3ac9 (OBSOLETE_UNINSTALLED) 20150319162909 jars/kryo-2.21-shaded.jar</pre>
</div>
</p>
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