[ImageJ-bugs] [Bug 1083] New: Unable to open Deltavision (.DV) files using Bioformats importer

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=1083

            Bug ID: 1083
           Summary: Unable to open Deltavision (.DV) files using
                    Bioformats importer
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: andrew.porter at cruk.manchester.ac.uk
                CC: andrew.porter at cruk.manchester.ac.uk

I am unable to open .DV files generated by our Deltavision microscope.

I have previously (over the last 6 months) been able to drag-and-drop, and
these files have opened; or I can use the File-Import-Bioformats dialogue box
to open them.

Now when I try either of these messages (and I have tried this for multiple
files).

I have recently been using TrackMate, and I notice that this seems to have some
Bioformats plugins associated with it; and I don't think I've tried opening .DV
files since I added TrackMate to my update list - so I wonder if this might be
the issue?

-> I have tried updating FIJI using the Help-Update FIJI option
-> I tried uninstalling Bioformats and reloading it using the Advanced Options
under the Manage Sites dialogue
-> I have tried opening files from different folders/locations
-> I manually installed the Deltavision Opener Plugin from here
(http://rsb.info.nih.gov/ij/plugins/track/delta.html) and can use this to open
the files, but it doesn't provide the Bioformats functionality (splitting
channels, autoscale) which are really useful

Any help gratefully received!

Andrew

Information about your version of Java:

  os.arch => x86
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) Client VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to:
C:\Users\aporter\DOCUME~1\FIJI\FIJI-W~1\Fiji.app/java/win32/jdk1.6.0_24//jre
  imagej.dir => C:\Users\aporter\DOCUME~1\FIJI\FIJI-W~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150602025708)
Fiji: http://fiji.sc/update/ (last check:20150605140752)
BAR: http://sites.imagej.net/Tiago/ (last check:20150604154025)
Bio-Formats: http://sites.imagej.net/Bio-Formats/ (last check:20150609022639)
CellMotility: http://sites.imagej.net/CellMotility/ (last check:20150514151923)
LOCI: http://sites.imagej.net/LOCI/ (last check:20150428225912)
Morphology: http://sites.imagej.net/Landini/ (last check:20140723155558)
NucleusJ: http://sites.imagej.net/PouletAxel/ (last check:20141101093602)
ScientiFig: http://sites.imagej.net/Aigouy/ (last check:20150326113209)
TrackMate-dev: http://sites.imagej.net/TrackMate-dev/ (last
check:20150330132557)
New:  (last check:0)

Files not up-to-date:
  1ad3be0d (LOCAL_ONLY) 20141025210334 jars/jpedalSTD.jar
  27211db7 (LOCAL_ONLY) 20090403141332 macros/StartupMacros.txt
  54a8746b (LOCAL_ONLY) 20141031160322 macros/toolsets/FibrilTool.txt
  1a200546 (LOCAL_ONLY) 20141031133346 macros/toolsets/PeakFinderTool.txt
  6bcba459 (LOCAL_ONLY) 20141031141921 macros/toolsets/aporter's Toolset.txt
  bc887d8f (LOCAL_ONLY) 20150116090502 plugins/3D_measure.txt
  29ebdb9a (LOCAL_ONLY) 20150611095857 plugins/Deltavision_Opener.jar
  66b8f8d1 (LOCAL_ONLY) 20150325155510 plugins/Macros/3DAngleTool.txt
  7a4e24bc (LOCAL_ONLY) 20150325152512 plugins/Macros/3Dangle.txt
  48f196e3 (LOCAL_ONLY) 20141031141714 plugins/PeakFinderTool.txt
  f61fbfec (LOCAL_ONLY) 20141031141653 plugins/Tools/PeakFinder_Tool.ijm

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