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<base href="http://fiji.sc/bugzilla/" />
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Unable to open Deltavision (.DV) files using Bioformats importer"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1083">1083</a>
</td>
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<tr>
<th>Summary</th>
<td>Unable to open Deltavision (.DV) files using Bioformats importer
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
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<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
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<th>Priority</th>
<td>P4
</td>
</tr>
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<th>Component</th>
<td>Plugins
</td>
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<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>andrew.porter@cruk.manchester.ac.uk
</td>
</tr>
<tr>
<th>CC</th>
<td>andrew.porter@cruk.manchester.ac.uk
</td>
</tr></table>
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<pre>I am unable to open .DV files generated by our Deltavision microscope.
I have previously (over the last 6 months) been able to drag-and-drop, and
these files have opened; or I can use the File-Import-Bioformats dialogue box
to open them.
Now when I try either of these messages (and I have tried this for multiple
files).
I have recently been using TrackMate, and I notice that this seems to have some
Bioformats plugins associated with it; and I don't think I've tried opening .DV
files since I added TrackMate to my update list - so I wonder if this might be
the issue?
-> I have tried updating FIJI using the Help-Update FIJI option
-> I tried uninstalling Bioformats and reloading it using the Advanced Options
under the Manage Sites dialogue
-> I have tried opening files from different folders/locations
-> I manually installed the Deltavision Opener Plugin from here
(<a href="http://rsb.info.nih.gov/ij/plugins/track/delta.html">http://rsb.info.nih.gov/ij/plugins/track/delta.html</a>) and can use this to open
the files, but it doesn't provide the Bioformats functionality (splitting
channels, autoscale) which are really useful
Any help gratefully received!
Andrew
Information about your version of Java:
os.arch => x86
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) Client VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
C:\Users\aporter\DOCUME~1\FIJI\FIJI-W~1\Fiji.app/java/win32/jdk1.6.0_24//jre
imagej.dir => C:\Users\aporter\DOCUME~1\FIJI\FIJI-W~1\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150602025708)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20150605140752)
BAR: <a href="http://sites.imagej.net/Tiago/">http://sites.imagej.net/Tiago/</a> (last check:20150604154025)
Bio-Formats: <a href="http://sites.imagej.net/Bio-Formats/">http://sites.imagej.net/Bio-Formats/</a> (last check:20150609022639)
CellMotility: <a href="http://sites.imagej.net/CellMotility/">http://sites.imagej.net/CellMotility/</a> (last check:20150514151923)
LOCI: <a href="http://sites.imagej.net/LOCI/">http://sites.imagej.net/LOCI/</a> (last check:20150428225912)
Morphology: <a href="http://sites.imagej.net/Landini/">http://sites.imagej.net/Landini/</a> (last check:20140723155558)
NucleusJ: <a href="http://sites.imagej.net/PouletAxel/">http://sites.imagej.net/PouletAxel/</a> (last check:20141101093602)
ScientiFig: <a href="http://sites.imagej.net/Aigouy/">http://sites.imagej.net/Aigouy/</a> (last check:20150326113209)
TrackMate-dev: <a href="http://sites.imagej.net/TrackMate-dev/">http://sites.imagej.net/TrackMate-dev/</a> (last
check:20150330132557)
New: (last check:0)
Files not up-to-date:
1ad3be0d (LOCAL_ONLY) 20141025210334 jars/jpedalSTD.jar
27211db7 (LOCAL_ONLY) 20090403141332 macros/StartupMacros.txt
54a8746b (LOCAL_ONLY) 20141031160322 macros/toolsets/FibrilTool.txt
1a200546 (LOCAL_ONLY) 20141031133346 macros/toolsets/PeakFinderTool.txt
6bcba459 (LOCAL_ONLY) 20141031141921 macros/toolsets/aporter's Toolset.txt
bc887d8f (LOCAL_ONLY) 20150116090502 plugins/3D_measure.txt
29ebdb9a (LOCAL_ONLY) 20150611095857 plugins/Deltavision_Opener.jar
66b8f8d1 (LOCAL_ONLY) 20150325155510 plugins/Macros/3DAngleTool.txt
7a4e24bc (LOCAL_ONLY) 20150325152512 plugins/Macros/3Dangle.txt
48f196e3 (LOCAL_ONLY) 20141031141714 plugins/PeakFinderTool.txt
f61fbfec (LOCAL_ONLY) 20141031141653 plugins/Tools/PeakFinder_Tool.ijm</pre>
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