[ImageJ-bugs] [Bug 906] java################### left in /tmp (Suse Linux 13.1)

bugzilla at fiji.sc bugzilla at fiji.sc
Sat Jan 31 10:32:31 CST 2015


http://fiji.sc/bugzilla/show_bug.cgi?id=906

mone7979 at gmx.de changed:

           What    |Removed                     |Added
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                 CC|                            |mone7979 at gmx.de

--- Comment #11 from mone7979 at gmx.de ---
Hi everyone,

I encounter the exact same problem as Aryeh.

I just got the latest stable release of Fiji 2 days ago, and also updated again
when the problem started.

I am running Fiji on a Windows 7 64-bit system. 
SCIFIO is by default turned off (I checked).

My macro is extremely simple, I just use the Color Deconvolution Plugin
repeatedly for some 600 microscopy images (quite large, about 3000x4000).

// some directories are retrieved before
for(i = 0; i < list.length; i++) 
{
    input = dir1+list[i];
    print(input);

    run("Open [Image IO]", "image=["+input+"]");
    run("Colour Deconvolution", "vectors=[Embryo Anatomie II] hide");

    if(isOpen(4))
    {
        selectImage(4);
        run("RGB Color");
        saveAs("Tiff", dir2 + list[i]);
    }

    run("Close All");
}

What happens is the following:
for every image a directory named java########## (##### being some large
number, as it was with Aryeh) is created in my temp directory, contents are
further directories src, target, and a file (the culprit) pom.xml.
pom.xml starts with about 66kB, but DOUBLES for each image, reaching about 68
MB after 12 images. The execution time increases significantly, so that I have
to process the images in chunks of about 10 images.
So apparently pom.xml is somehow internally reset after the macro finished
(that's how I imagine it).

So it seems to me the problem was not yet solved. Or do you have any ideas?
Thanks in advance.

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