<html>
<head>
<base href="http://fiji.sc/bugzilla/" />
</head>
<body><span class="vcard"><a class="email" href="mailto:mone7979@gmx.de" title="mone7979@gmx.de">mone7979@gmx.de</a>
</span> changed
<a class="bz_bug_link
bz_status_NEW "
title="NEW - java################### left in /tmp (Suse Linux 13.1)"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=906">bug 906</a>
<br>
<table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>What</th>
<th>Removed</th>
<th>Added</th>
</tr>
<tr>
<td style="text-align:right;">CC</td>
<td>
</td>
<td>mone7979@gmx.de
</td>
</tr></table>
<p>
<div>
<b><a class="bz_bug_link
bz_status_NEW "
title="NEW - java################### left in /tmp (Suse Linux 13.1)"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=906#c11">Comment # 11</a>
on <a class="bz_bug_link
bz_status_NEW "
title="NEW - java################### left in /tmp (Suse Linux 13.1)"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=906">bug 906</a>
from <span class="vcard"><a class="email" href="mailto:mone7979@gmx.de" title="mone7979@gmx.de">mone7979@gmx.de</a>
</span></b>
<pre>Hi everyone,
I encounter the exact same problem as Aryeh.
I just got the latest stable release of Fiji 2 days ago, and also updated again
when the problem started.
I am running Fiji on a Windows 7 64-bit system.
SCIFIO is by default turned off (I checked).
My macro is extremely simple, I just use the Color Deconvolution Plugin
repeatedly for some 600 microscopy images (quite large, about 3000x4000).
// some directories are retrieved before
for(i = 0; i < list.length; i++)
{
input = dir1+list[i];
print(input);
run("Open [Image IO]", "image=["+input+"]");
run("Colour Deconvolution", "vectors=[Embryo Anatomie II] hide");
if(isOpen(4))
{
selectImage(4);
run("RGB Color");
saveAs("Tiff", dir2 + list[i]);
}
run("Close All");
}
What happens is the following:
for every image a directory named java########## (##### being some large
number, as it was with Aryeh) is created in my temp directory, contents are
further directories src, target, and a file (the culprit) pom.xml.
pom.xml starts with about 66kB, but DOUBLES for each image, reaching about 68
MB after 12 images. The execution time increases significantly, so that I have
to process the images in chunks of about 10 images.
So apparently pom.xml is somehow internally reset after the macro finished
(that's how I imagine it).
So it seems to me the problem was not yet solved. Or do you have any ideas?
Thanks in advance.</pre>
</div>
</p>
<hr>
<span>You are receiving this mail because:</span>
<ul>
<li>You are the assignee for the bug.</li>
</ul>
</body>
</html>