[ImageJ-bugs] [Bug 996] New: Binary image

bugzilla at fiji.sc bugzilla at fiji.sc
Tue Jan 27 23:39:43 CST 2015


http://fiji.sc/bugzilla/show_bug.cgi?id=996

            Bug ID: 996
           Summary: Binary image
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: knoma at ucsd.edu
                CC: knoma at ucsd.edu

Dear Sir/Madam,

What I want to do is making a binary file and use it as ROI for the measurement
of another file.
So,
I made a binary file (File1).
I chose the File1 for "Redirect to" in the "Set measurement" command to analyze
another file (File2).
I tried to do "Particle analysis" for File2.
But it shows the following error no matter how I make a binary file:
"A thresholded file or 8-bit binary file is required. ..."
Do you have any ideas about how it happenes?

I reinstalled the latest Fiji but it did not help.
I checked the File1 is binary by extracting values.
Thanks.

Ken

Information about your version of Java:

  os.arch => amd64
  os.name => Windows NT (unknown)
  os.version => 6.2
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to:
C:\Users\Kentaro\DOCUME~1\Research\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\Kentaro\DOCUME~1\Research\FIJI-W~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150122044514)
Fiji: http://fiji.sc/update/ (last check:20150127132630)

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