[ImageJ-bugs] [Bug 995] New: HDF5 import no longer working

bugzilla at fiji.sc bugzilla at fiji.sc
Tue Jan 27 16:36:09 CST 2015


http://fiji.sc/bugzilla/show_bug.cgi?id=995

            Bug ID: 995
           Summary: HDF5 import no longer working
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: aaronj at janelia.hhmi.org
                CC: aaronj at janelia.hhmi.org

The import HDF5 file functionality appears to have been lost.  Files that I
have successfully open many times over the past several months are no longer
being opened.  I do get a log file with the output of:

/time001:DATASET

This corresponds to the first dataset within the file in question.  But,
nothing beyond this is giving me any further info.

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to:
C:\Users\aaronj\DOCUME~1\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\aaronj\DOCUME~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150122054514)
Fiji: http://fiji.sc/update/ (last check:20150127142630)
HDF5: http://sites.imagej.net/Ronneber/ (last check:20140827124014)
MOSAIC ToolSuite:
http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/ (last
check:20150123093155)

Files not up-to-date:
  1ad3be0d (LOCAL_ONLY) 20140627205826 jars/jpedalSTD.jar
  0309f51d (LOCAL_ONLY) 20140923160542 plugins/OpenSIF_.class
  1d4b1a8e (LOCAL_ONLY) 20140923160803 plugins/Open_SIF.class

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