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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - HDF5 import no longer working"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=995">995</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>HDF5 import no longer working
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
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<th>OS</th>
<td>Windows
</td>
</tr>
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<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>aaronj@janelia.hhmi.org
</td>
</tr>
<tr>
<th>CC</th>
<td>aaronj@janelia.hhmi.org
</td>
</tr></table>
<p>
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<pre>The import HDF5 file functionality appears to have been lost. Files that I
have successfully open many times over the past several months are no longer
being opened. I do get a log file with the output of:
/time001:DATASET
This corresponds to the first dataset within the file in question. But,
nothing beyond this is giving me any further info.
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
C:\Users\aaronj\DOCUME~1\Fiji.app/java/win64/jdk1.6.0_24//jre
imagej.dir => C:\Users\aaronj\DOCUME~1\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150122054514)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20150127142630)
HDF5: <a href="http://sites.imagej.net/Ronneber/">http://sites.imagej.net/Ronneber/</a> (last check:20140827124014)
MOSAIC ToolSuite:
<a href="http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/">http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/</a> (last
check:20150123093155)
Files not up-to-date:
1ad3be0d (LOCAL_ONLY) 20140627205826 jars/jpedalSTD.jar
0309f51d (LOCAL_ONLY) 20140923160542 plugins/OpenSIF_.class
1d4b1a8e (LOCAL_ONLY) 20140923160803 plugins/Open_SIF.class</pre>
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