[ImageJ-bugs] [Bug 1151] New: XMml files not readable, throw an error

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=1151

            Bug ID: 1151
           Summary: XMml files not readable, throw an error
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Linux
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: ajain at mpi-cbg.de
                CC: ajain at mpi-cbg.de

The updated fiji throws an exception while trying to open Xml files with
BigData Viewer or the Multiview reconstruction Plugins. Here is the exception
generated while trying to open with the Bigdata Viewer.

(Fiji Is Just) ImageJ 2.0.0-rc-36/1.50a; Java 1.6.0_24 [64-bit]; Linux
2.6.32-504.23.4.el6.x86_64; 45MB of 95891MB (<1%)

java.lang.NoClassDefFoundError: Could not initialize class
org.jdom2.input.sax.XMLReaders
    at org.jdom2.input.SAXBuilder.<init>(SAXBuilder.java:338)
    at org.jdom2.input.SAXBuilder.<init>(SAXBuilder.java:221)
    at bdv.spimdata.XmlIoSpimDataMinimal.load(XmlIoSpimDataMinimal.java:39)
    at bdv.BigDataViewer.open(BigDataViewer.java:459)
    at bdv.BigDataViewer.view(BigDataViewer.java:670)
    at bdv.ij.BigDataViewerPlugIn.run(BigDataViewerPlugIn.java:108)
    at ij.IJ.runUserPlugIn(IJ.java:212)
    at ij.IJ.runPlugIn(IJ.java:176)
    at ij.Executer.runCommand(Executer.java:132)
    at ij.Executer.run(Executer.java:65)
    at java.lang.Thread.run(Thread.java:662)

Information about your version of Java:

  os.arch => amd64
  os.name => Linux
  os.version => 2.6.32-504.23.4.el6.x86_64
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => gnome
  file.separator => /

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to:
/home/ajain/Desktop/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre
  imagej.dir => /home/ajain/Desktop/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150827150954)
Fiji: http://update.fiji.sc/ (last check:20150826162017)

-- 
You are receiving this mail because:
You are the assignee for the bug.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://imagej.net/pipermail/imagej-bugs/attachments/20150828/5b90799e/attachment.html>