<html>
<head>
<base href="http://fiji.sc/bugzilla/" />
</head>
<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - XMml files not readable, throw an error"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1151">1151</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>XMml files not readable, throw an error
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Linux
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>ajain@mpi-cbg.de
</td>
</tr>
<tr>
<th>CC</th>
<td>ajain@mpi-cbg.de
</td>
</tr></table>
<p>
<div>
<pre>The updated fiji throws an exception while trying to open Xml files with
BigData Viewer or the Multiview reconstruction Plugins. Here is the exception
generated while trying to open with the Bigdata Viewer.
(Fiji Is Just) ImageJ 2.0.0-rc-36/1.50a; Java 1.6.0_24 [64-bit]; Linux
2.6.32-504.23.4.el6.x86_64; 45MB of 95891MB (<1%)
java.lang.NoClassDefFoundError: Could not initialize class
org.jdom2.input.sax.XMLReaders
at org.jdom2.input.SAXBuilder.<init>(SAXBuilder.java:338)
at org.jdom2.input.SAXBuilder.<init>(SAXBuilder.java:221)
at bdv.spimdata.XmlIoSpimDataMinimal.load(XmlIoSpimDataMinimal.java:39)
at bdv.BigDataViewer.open(BigDataViewer.java:459)
at bdv.BigDataViewer.view(BigDataViewer.java:670)
at bdv.ij.BigDataViewerPlugIn.run(BigDataViewerPlugIn.java:108)
at ij.IJ.runUserPlugIn(IJ.java:212)
at ij.IJ.runPlugIn(IJ.java:176)
at ij.Executer.runCommand(Executer.java:132)
at ij.Executer.run(Executer.java:65)
at java.lang.Thread.run(Thread.java:662)
Information about your version of Java:
os.arch => amd64
os.name => Linux
os.version => 2.6.32-504.23.4.el6.x86_64
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => gnome
file.separator => /
The up-to-date check says: CHECK_TURNED_OFF
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
/home/ajain/Desktop/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre
imagej.dir => /home/ajain/Desktop/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150827150954)
Fiji: <a href="http://update.fiji.sc/">http://update.fiji.sc/</a> (last check:20150826162017)</pre>
</div>
</p>
<hr>
<span>You are receiving this mail because:</span>
<ul>
<li>You are the assignee for the bug.</li>
</ul>
</body>
</html>