[ImageJ-bugs] [Bug 976] New: Some large actions result in ImageJ (Fiji) freeze, sometimes

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=976

            Bug ID: 976
           Summary: Some large actions result in ImageJ (Fiji) freeze,
                    sometimes
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Linux
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: vkehayas at gmail.com
                CC: vkehayas at gmail.com

For example, when I try to get the histogram of a 512x128x3427 stack (428MB),
by using the shortcut Cntrl + H,
the application freezes.
I am not limited by processing power or memory (~20GB are allocated to Fiji).
This issue started happening today. Only one plugin was updated, I think (SPIM
Registration, that I don't use).
However, it's not happening every time and I am unable to locate the reason.
Let me know if I can provide any other relevant information.

Information about your version of Java:

  os.arch => amd64
  os.name => Linux
  os.version => 3.13.0-43-generic
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => gnome
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to:
/home/vassilis/Apps/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre
  imagej.dir => /home/vassilis/Apps/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20141211185341)
Fiji: http://fiji.sc/update/ (last check:20141216104440)

Files not up-to-date:
  e8d11864 (LOCAL_ONLY) 20141104141133 macros/CalciumAnalysis_VK.ijm
  e4cb5a42 (LOCAL_ONLY) 20141203135405 macros/StartupMacros.txt
  bddf2b19 (LOCAL_ONLY) 20141203142626 plugins/CalciumAnalysis_VK.ijm
  b0398adb (LOCAL_ONLY) 20140212174320
plugins/DeconvolutionLab/DeconvolutionLab_.jar
  adeb04d4 (LOCAL_ONLY) 20130627155627 plugins/Stack_Aligner.jar

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