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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Some large actions result in ImageJ (Fiji) freeze, sometimes"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=976">976</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Some large actions result in ImageJ (Fiji) freeze, sometimes
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Linux
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>vkehayas@gmail.com
</td>
</tr>
<tr>
<th>CC</th>
<td>vkehayas@gmail.com
</td>
</tr></table>
<p>
<div>
<pre>For example, when I try to get the histogram of a 512x128x3427 stack (428MB),
by using the shortcut Cntrl + H,
the application freezes.
I am not limited by processing power or memory (~20GB are allocated to Fiji).
This issue started happening today. Only one plugin was updated, I think (SPIM
Registration, that I don't use).
However, it's not happening every time and I am unable to locate the reason.
Let me know if I can provide any other relevant information.
Information about your version of Java:
os.arch => amd64
os.name => Linux
os.version => 3.13.0-43-generic
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => gnome
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
/home/vassilis/Apps/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre
imagej.dir => /home/vassilis/Apps/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20141211185341)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20141216104440)
Files not up-to-date:
e8d11864 (LOCAL_ONLY) 20141104141133 macros/CalciumAnalysis_VK.ijm
e4cb5a42 (LOCAL_ONLY) 20141203135405 macros/StartupMacros.txt
bddf2b19 (LOCAL_ONLY) 20141203142626 plugins/CalciumAnalysis_VK.ijm
b0398adb (LOCAL_ONLY) 20140212174320
plugins/DeconvolutionLab/DeconvolutionLab_.jar
adeb04d4 (LOCAL_ONLY) 20130627155627 plugins/Stack_Aligner.jar</pre>
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</p>
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