[ImageJ-bugs] [Bug 901] New: Fiji cannot open stacks

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=901

            Bug ID: 901
           Summary: Fiji cannot open stacks
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: saumya.saurabh at gmail.com
                CC: saumya.saurabh at gmail.com

When I try to open an image sequence that consists of 60 files in one fiolder,
I get this error:


(Fiji Is Just) ImageJ 2.0.0-rc-9/1.49d; Java 1.6.0_24 [64-bit]; Windows 7 6.1;
76MB of 6103MB (1%)

java.lang.NullPointerException
    at
io.scif.formats.MicromanagerFormat$Reader.openPlane(MicromanagerFormat.java:781)
    at
io.scif.formats.MicromanagerFormat$Reader.openPlane(MicromanagerFormat.java:740)
    at io.scif.AbstractReader.openPlane(AbstractReader.java:167)
    at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:170)
    at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:151)
    at io.scif.filters.PlaneSeparator.openPlane(PlaneSeparator.java:297)
    at io.scif.filters.PlaneSeparator.openPlane(PlaneSeparator.java:208)
    at
io.scif.filters.AbstractReaderFilter.openPlane(AbstractReaderFilter.java:225)
    at
io.scif.filters.AbstractReaderFilter.openPlane(AbstractReaderFilter.java:191)
    at io.scif.img.ImgOpener.read(ImgOpener.java:808)
    at io.scif.img.ImgOpener.read(ImgOpener.java:793)
    at io.scif.img.ImgOpener.read(ImgOpener.java:793)
    at io.scif.img.ImgOpener.read(ImgOpener.java:793)
    at io.scif.img.ImgOpener.read(ImgOpener.java:775)
    at io.scif.img.ImgOpener.readPlanes(ImgOpener.java:761)
    at io.scif.img.ImgOpener.openImgs(ImgOpener.java:362)
    at io.scif.img.ImgOpener.openImgs(ImgOpener.java:257)
    at io.scif.img.ImgOpener.openImgs(ImgOpener.java:145)
    at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:266)
    at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:250)
    at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:78)
    at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)
    at
net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)
    at
net.imagej.legacy.DefaultLegacyHooks.interceptOpenImage(DefaultLegacyHooks.java:430)
    at ij.plugin.FolderOpener.run(FolderOpener.java:115)
    at ij.IJ.runPlugIn(IJ.java:172)
    at ij.Executer.runCommand(Executer.java:131)
    at ij.Executer.run(Executer.java:64)
    at java.lang.Thread.run(Thread.java:662)

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to:
C:\Users\saumyas2\DOWNLO~1\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\saumyas2\DOWNLO~1\FIJI-W~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140711150647)
Fiji: http://fiji.sc/update/ (last check:20140714170940)

Files not up-to-date:
  3abf4e77 (MODIFIED) 20140813185222 jars/ij-1.49d.jar

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