<html>
<head>
<base href="http://fiji.sc/bugzilla/" />
</head>
<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Fiji cannot open stacks"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=901">901</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Fiji cannot open stacks
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>saumya.saurabh@gmail.com
</td>
</tr>
<tr>
<th>CC</th>
<td>saumya.saurabh@gmail.com
</td>
</tr></table>
<p>
<div>
<pre>When I try to open an image sequence that consists of 60 files in one fiolder,
I get this error:
(Fiji Is Just) ImageJ 2.0.0-rc-9/1.49d; Java 1.6.0_24 [64-bit]; Windows 7 6.1;
76MB of 6103MB (1%)
java.lang.NullPointerException
at
io.scif.formats.MicromanagerFormat$Reader.openPlane(MicromanagerFormat.java:781)
at
io.scif.formats.MicromanagerFormat$Reader.openPlane(MicromanagerFormat.java:740)
at io.scif.AbstractReader.openPlane(AbstractReader.java:167)
at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:170)
at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:151)
at io.scif.filters.PlaneSeparator.openPlane(PlaneSeparator.java:297)
at io.scif.filters.PlaneSeparator.openPlane(PlaneSeparator.java:208)
at
io.scif.filters.AbstractReaderFilter.openPlane(AbstractReaderFilter.java:225)
at
io.scif.filters.AbstractReaderFilter.openPlane(AbstractReaderFilter.java:191)
at io.scif.img.ImgOpener.read(ImgOpener.java:808)
at io.scif.img.ImgOpener.read(ImgOpener.java:793)
at io.scif.img.ImgOpener.read(ImgOpener.java:793)
at io.scif.img.ImgOpener.read(ImgOpener.java:793)
at io.scif.img.ImgOpener.read(ImgOpener.java:775)
at io.scif.img.ImgOpener.readPlanes(ImgOpener.java:761)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:362)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:257)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:145)
at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:266)
at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:250)
at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:78)
at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)
at
net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)
at
net.imagej.legacy.DefaultLegacyHooks.interceptOpenImage(DefaultLegacyHooks.java:430)
at ij.plugin.FolderOpener.run(FolderOpener.java:115)
at ij.IJ.runPlugIn(IJ.java:172)
at ij.Executer.runCommand(Executer.java:131)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:662)
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
C:\Users\saumyas2\DOWNLO~1\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24//jre
imagej.dir => C:\Users\saumyas2\DOWNLO~1\FIJI-W~1\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20140711150647)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20140714170940)
Files not up-to-date:
3abf4e77 (MODIFIED) 20140813185222 jars/ij-1.49d.jar</pre>
</div>
</p>
<hr>
<span>You are receiving this mail because:</span>
<ul>
<li>You are the assignee for the bug.</li>
</ul>
</body>
</html>