[ImageJ-bugs] [Bug 887] New: Error - lif files LAS 4.0

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=887

            Bug ID: 887
           Summary: Error - lif files LAS 4.0
           Product: Fiji
           Version: unspecified
          Hardware: Macintosh
                OS: Mac OS
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: sampaio at ibmc.up.pt
                CC: sampaio at ibmc.up.pt

Error when try lif files generated by Leica LAS AF 4.0. 
When I tried to open it appears a box saing that file is not in a suported
format. 
Open via Bioformats I get the following log:
loci.formats.FormatException: Invalid Memory Block: found magic bytes 0,
expected 112
This appens in Mac OS X and Linux. Windows not tested.

Thank you very much.

Paula Sampaio

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.6.8
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-462-10M4609
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-462
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140802165300)
Fiji: http://fiji.sc/update/ (last check:20140730200634)
3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20140604070506)
BAR: http://sites.imagej.net/Tiago/ (last check:20140714042313)
Bio-Formats: http://sites.imagej.net/Bio-Formats/ (last check:20140806022639)
Biomedgroup: http://sites.imagej.net/Biomedgroup/ (last check:20140720121812)
BioVoxxel: http://sites.imagej.net/BioVoxxel/ (last check:20140730091642)
Cookbook: http://sites.imagej.net/Cookbook/ (last check:20131220231857)
CMCI-EMBL: http://sites.imagej.net/Miura/ (last check:20140718150940)
CMP-BIA tools: http://sites.imagej.net/CMP-BIA/ (last check:20140423153817)
IBMP-CNRS: http://www-ibmp.u-strasbg.fr/fijiupdates/ (last
check:20140526154644)
IMCF Uni Basel: http://sites.imagej.net/UniBas-IMCF/ (last
check:20140802222144)
MOSAIC ToolSuite:
http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/ (last
check:20140801103045)
PHANTAST: http://sites.imagej.net/Nicjac/ (last check:20140224225450)
PTBIOP: http://biop.epfl.ch/Fiji-Update/ (last check:20140730103856)
ScientiFig: http://sites.imagej.net/Aigouy/ (last check:20140806152638)

Files not up-to-date:
  bc774937 (MODIFIED) 20140611224841 Contents/Info.plist
  4f6e4a5e (LOCAL_ONLY) 20140414120839 macros/Metadata.ijm
  0bd63441 (LOCAL_ONLY) 20140622203309 macros/Pedro.ijm
  a72820a7 (LOCAL_ONLY) 20140617031214 macros/on wor.ijm
  2f47077b (LOCAL_ONLY) 20140617143621 macros/on wor.txt
  9f80d875 (LOCAL_ONLY) 20080611153812 macros/toolsets/3D measure Tools.txt
  399e67af (LOCAL_ONLY) 20050406100906 macros/toolsets/3D-Distance-Tool.txt
  25640c70 (LOCAL_ONLY) 20090622130806 macros/toolsets/ColourProfiler Tools.txt
  bd7bc5d1 (LOCAL_ONLY) 20140410001925 plugins/ActionBar/Shared
Bars/BIOP_MultiManualSelect.ijm
  c271b415 (LOCAL_ONLY) 20140510010455 plugins/ActionBar/Shared
Bars/BIOP_PSF_Quality.ijm
  08afb731 (LOCAL_ONLY) 20140410001925 plugins/ActionBar/Shared
Bars/BIOP_VSI_Reader.ijm
  4edb1d6f (LOCAL_ONLY) 20140410001925 plugins/ActionBar/Shared
Bars/Common_Tools.ijm
  db280c9c (LOCAL_ONLY) 20140410001926 plugins/ActionBar/Shared
Bars/JaCoP_Tools.ijm
  b0398adb (LOCAL_ONLY) 20140212164320
plugins/DeconvolutionLab/DeconvolutionLab_.jar
  85178932 (LOCAL_ONLY) 20130319101304 plugins/PSF_Generator.jar
  a67c844f (LOCAL_ONLY) 20140703232429 plugins/ScientiFig/ScientiFigPrefs.txt
  3bec3288 (LOCAL_ONLY) 20140410235319 plugins/gdsc_.jar

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