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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Error - lif files LAS 4.0"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=887">887</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Error - lif files LAS 4.0
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>sampaio@ibmc.up.pt
</td>
</tr>
<tr>
<th>CC</th>
<td>sampaio@ibmc.up.pt
</td>
</tr></table>
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<pre>Error when try lif files generated by Leica LAS AF 4.0.
When I tried to open it appears a box saing that file is not in a suported
format.
Open via Bioformats I get the following log:
loci.formats.FormatException: Invalid Memory Block: found magic bytes 0,
expected 112
This appens in Mac OS X and Linux. Windows not tested.
Thank you very much.
Paula Sampaio
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.6.8
java.version => 1.6.0_65
java.vendor => Apple Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_65-b14-462-10M4609
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 20.65-b04-462
java.vm.vendor => Apple Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: null
imagej.dir => /Applications/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20140802165300)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20140730200634)
3D ImageJ Suite: <a href="http://sites.imagej.net/Tboudier/">http://sites.imagej.net/Tboudier/</a> (last check:20140604070506)
BAR: <a href="http://sites.imagej.net/Tiago/">http://sites.imagej.net/Tiago/</a> (last check:20140714042313)
Bio-Formats: <a href="http://sites.imagej.net/Bio-Formats/">http://sites.imagej.net/Bio-Formats/</a> (last check:20140806022639)
Biomedgroup: <a href="http://sites.imagej.net/Biomedgroup/">http://sites.imagej.net/Biomedgroup/</a> (last check:20140720121812)
BioVoxxel: <a href="http://sites.imagej.net/BioVoxxel/">http://sites.imagej.net/BioVoxxel/</a> (last check:20140730091642)
Cookbook: <a href="http://sites.imagej.net/Cookbook/">http://sites.imagej.net/Cookbook/</a> (last check:20131220231857)
CMCI-EMBL: <a href="http://sites.imagej.net/Miura/">http://sites.imagej.net/Miura/</a> (last check:20140718150940)
CMP-BIA tools: <a href="http://sites.imagej.net/CMP-BIA/">http://sites.imagej.net/CMP-BIA/</a> (last check:20140423153817)
IBMP-CNRS: <a href="http://www-ibmp.u-strasbg.fr/fijiupdates/">http://www-ibmp.u-strasbg.fr/fijiupdates/</a> (last
check:20140526154644)
IMCF Uni Basel: <a href="http://sites.imagej.net/UniBas-IMCF/">http://sites.imagej.net/UniBas-IMCF/</a> (last
check:20140802222144)
MOSAIC ToolSuite:
<a href="http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/">http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/</a> (last
check:20140801103045)
PHANTAST: <a href="http://sites.imagej.net/Nicjac/">http://sites.imagej.net/Nicjac/</a> (last check:20140224225450)
PTBIOP: <a href="http://biop.epfl.ch/Fiji-Update/">http://biop.epfl.ch/Fiji-Update/</a> (last check:20140730103856)
ScientiFig: <a href="http://sites.imagej.net/Aigouy/">http://sites.imagej.net/Aigouy/</a> (last check:20140806152638)
Files not up-to-date:
bc774937 (MODIFIED) 20140611224841 Contents/Info.plist
4f6e4a5e (LOCAL_ONLY) 20140414120839 macros/Metadata.ijm
0bd63441 (LOCAL_ONLY) 20140622203309 macros/Pedro.ijm
a72820a7 (LOCAL_ONLY) 20140617031214 macros/on wor.ijm
2f47077b (LOCAL_ONLY) 20140617143621 macros/on wor.txt
9f80d875 (LOCAL_ONLY) 20080611153812 macros/toolsets/3D measure Tools.txt
399e67af (LOCAL_ONLY) 20050406100906 macros/toolsets/3D-Distance-Tool.txt
25640c70 (LOCAL_ONLY) 20090622130806 macros/toolsets/ColourProfiler Tools.txt
bd7bc5d1 (LOCAL_ONLY) 20140410001925 plugins/ActionBar/Shared
Bars/BIOP_MultiManualSelect.ijm
c271b415 (LOCAL_ONLY) 20140510010455 plugins/ActionBar/Shared
Bars/BIOP_PSF_Quality.ijm
08afb731 (LOCAL_ONLY) 20140410001925 plugins/ActionBar/Shared
Bars/BIOP_VSI_Reader.ijm
4edb1d6f (LOCAL_ONLY) 20140410001925 plugins/ActionBar/Shared
Bars/Common_Tools.ijm
db280c9c (LOCAL_ONLY) 20140410001926 plugins/ActionBar/Shared
Bars/JaCoP_Tools.ijm
b0398adb (LOCAL_ONLY) 20140212164320
plugins/DeconvolutionLab/DeconvolutionLab_.jar
85178932 (LOCAL_ONLY) 20130319101304 plugins/PSF_Generator.jar
a67c844f (LOCAL_ONLY) 20140703232429 plugins/ScientiFig/ScientiFigPrefs.txt
3bec3288 (LOCAL_ONLY) 20140410235319 plugins/gdsc_.jar</pre>
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