[ImageJ-bugs] [Bug 876] New: Null pointer Exception Reading DICOM format

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=876

            Bug ID: 876
           Summary: Null pointer Exception Reading DICOM format
           Product: Fiji
           Version: unspecified
          Hardware: Macintosh
                OS: Mac OS
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: rat666 at gmail.com
                CC: rat666 at gmail.com

Open a DICOM formated image

File->Open...

I had an MRI on 07/2014, and can open the images in this version. They open
fine
in standard imageJ 1.48U.  I can upload an example, when I find out how.

Exception:
(Fiji Is Just) ImageJ 2.0.0-rc-9/1.49d; Java 1.6.0_65 [64-bit]; Mac OS X
10.7.5; 12MB of 3369MB (<1%)

java.lang.NullPointerException
    at io.scif.formats.DICOMFormat$Parser.addFileToList(DICOMFormat.java:1649)
    at io.scif.formats.DICOMFormat$Parser.scanDirectory(DICOMFormat.java:1574)
    at io.scif.formats.DICOMFormat$Parser.makeFileList(DICOMFormat.java:1485)
    at io.scif.formats.DICOMFormat$Parser.typedParse(DICOMFormat.java:1432)
    at io.scif.formats.DICOMFormat$Parser.typedParse(DICOMFormat.java:1106)
    at io.scif.AbstractParser.parse(AbstractParser.java:252)
    at io.scif.AbstractParser.parse(AbstractParser.java:335)
    at io.scif.AbstractParser.parse(AbstractParser.java:52)
    at io.scif.AbstractReader.setSource(AbstractReader.java:270)
    at
io.scif.services.DefaultInitializeService.initializeReader(DefaultInitializeService.java:90)
    at io.scif.img.ImgOpener.createReader(ImgOpener.java:542)
    at io.scif.img.ImgOpener.openImgs(ImgOpener.java:144)
    at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:266)
    at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:250)
    at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:78)
    at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)
    at
net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)
    at
net.imagej.legacy.DefaultLegacyHooks.interceptFileOpen(DefaultLegacyHooks.java:421)
    at
net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:154)
    at ij.IJ.runPlugIn(IJ.java)
    at ij.Executer.runCommand(Executer.java:131)
    at ij.Executer.run(Executer.java:64)
    at java.lang.Thread.run(Thread.java:695)

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.7.5
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-462-11M4609
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-462
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20140802165300)
Fiji: http://fiji.sc/update/ (last check:20140730200634)

Files not up-to-date:
  ebcd76fa (MODIFIED) 20140613122205 Contents/Info.plist
  522879f2 (LOCAL_ONLY) 20120511154629
plugins/Intensity_Correlation_Analysis.class
  c33d5648 (LOCAL_ONLY) 20050928181804 plugins/MI_.class
  3589dfdf (LOCAL_ONLY) 20121214124358 plugins/MultiStackReg1.45_.jar
  617c3507 (LOCAL_ONLY) 20130723155349 plugins/QuickTime_Plugins.jar
  7785f532 (LOCAL_ONLY) 20140523155107 plugins/QuimP_11b.jar
  3c9ea4b7 (LOCAL_ONLY) 20120511155147 plugins/Ratio_Plus.class
  8e2e865e (LOCAL_ONLY) 20050928181804 plugins/Register_ROI.class
  38965c33 (LOCAL_ONLY) 20050928181804 plugins/Register_ROI_MI.class
  6970afac (LOCAL_ONLY) 20050927183506 plugins/Register_ROI_MI_Edges.class
  15089289 (LOCAL_ONLY) 20120425153958 plugins/Tracker_Plugins.jar
  86901120 (LOCAL_ONLY) 20050928181902 plugins/bij.jar
  f1ac6ce6 (LOCAL_ONLY) 20120416121230 plugins/lineagetracker_1.1.3.jar
  d3260180 (LOCAL_ONLY) 20110303194101 scripts/Record_Desktop.py
  0ea7f8fc (LOCAL_ONLY) 20110303194101 scripts/Record_Window.py

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