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<head>
<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Null pointer Exception Reading DICOM format"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=876">876</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Null pointer Exception Reading DICOM format
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>rat666@gmail.com
</td>
</tr>
<tr>
<th>CC</th>
<td>rat666@gmail.com
</td>
</tr></table>
<p>
<div>
<pre>Open a DICOM formated image
File->Open...
I had an MRI on 07/2014, and can open the images in this version. They open
fine
in standard imageJ 1.48U. I can upload an example, when I find out how.
Exception:
(Fiji Is Just) ImageJ 2.0.0-rc-9/1.49d; Java 1.6.0_65 [64-bit]; Mac OS X
10.7.5; 12MB of 3369MB (<1%)
java.lang.NullPointerException
at io.scif.formats.DICOMFormat$Parser.addFileToList(DICOMFormat.java:1649)
at io.scif.formats.DICOMFormat$Parser.scanDirectory(DICOMFormat.java:1574)
at io.scif.formats.DICOMFormat$Parser.makeFileList(DICOMFormat.java:1485)
at io.scif.formats.DICOMFormat$Parser.typedParse(DICOMFormat.java:1432)
at io.scif.formats.DICOMFormat$Parser.typedParse(DICOMFormat.java:1106)
at io.scif.AbstractParser.parse(AbstractParser.java:252)
at io.scif.AbstractParser.parse(AbstractParser.java:335)
at io.scif.AbstractParser.parse(AbstractParser.java:52)
at io.scif.AbstractReader.setSource(AbstractReader.java:270)
at
io.scif.services.DefaultInitializeService.initializeReader(DefaultInitializeService.java:90)
at io.scif.img.ImgOpener.createReader(ImgOpener.java:542)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:144)
at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:266)
at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:250)
at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:78)
at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)
at
net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)
at
net.imagej.legacy.DefaultLegacyHooks.interceptFileOpen(DefaultLegacyHooks.java:421)
at
net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:154)
at ij.IJ.runPlugIn(IJ.java)
at ij.Executer.runCommand(Executer.java:131)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:695)
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.7.5
java.version => 1.6.0_65
java.vendor => Apple Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_65-b14-462-11M4609
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 20.65-b04-462
java.vm.vendor => Apple Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: CHECK_TURNED_OFF
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: null
imagej.dir => /Applications/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20140802165300)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20140730200634)
Files not up-to-date:
ebcd76fa (MODIFIED) 20140613122205 Contents/Info.plist
522879f2 (LOCAL_ONLY) 20120511154629
plugins/Intensity_Correlation_Analysis.class
c33d5648 (LOCAL_ONLY) 20050928181804 plugins/MI_.class
3589dfdf (LOCAL_ONLY) 20121214124358 plugins/MultiStackReg1.45_.jar
617c3507 (LOCAL_ONLY) 20130723155349 plugins/QuickTime_Plugins.jar
7785f532 (LOCAL_ONLY) 20140523155107 plugins/QuimP_11b.jar
3c9ea4b7 (LOCAL_ONLY) 20120511155147 plugins/Ratio_Plus.class
8e2e865e (LOCAL_ONLY) 20050928181804 plugins/Register_ROI.class
38965c33 (LOCAL_ONLY) 20050928181804 plugins/Register_ROI_MI.class
6970afac (LOCAL_ONLY) 20050927183506 plugins/Register_ROI_MI_Edges.class
15089289 (LOCAL_ONLY) 20120425153958 plugins/Tracker_Plugins.jar
86901120 (LOCAL_ONLY) 20050928181902 plugins/bij.jar
f1ac6ce6 (LOCAL_ONLY) 20120416121230 plugins/lineagetracker_1.1.3.jar
d3260180 (LOCAL_ONLY) 20110303194101 scripts/Record_Desktop.py
0ea7f8fc (LOCAL_ONLY) 20110303194101 scripts/Record_Window.py</pre>
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