[ImageJ-devel] Problem getting the context

[Thorsten Wagner]

Dear Mark,
thank you for your willingness to help me.
No, we are not using the latest TrackMate master. I'm implementing the
find-maxima detector for TrackMate and therefore I'm using a modified
version [1] (this is the version which produces the exception) of the
find-maxima branch of TrackMate [2] .
To reproduce this error (sorry that I've forgotten this important
information in my last mail!):
 - Start TrackMate with the Main Method in the TrackMatePlugIn_.java
(I'm using eclipse and select "Run as -> Java Application")
 - Select "Next" in TrackMate
 - Select the "Find Maxima" detector
 - Select a arbitary threshold
 - Press Preview
The static initializer did not help.
Thank you for your help!
Cheers,
Thorsten
[1] https://github.com/thorstenwagner/TrackMate/tree/master/src/main/ja
va/fiji/plugin/trackmate/detection/findmaxima (These classes containing
all changes that I've made)
[2] https://github.com/fiji/TrackMate/tree/find-maxima
Am Dienstag, den 14.07.2015, 09:45 -0500 schrieb Mark Hiner:
> Hi Thorsten,
> 
> >For some reasons we have to start TrackMate by the following main
> method:
> 
> How exactly are you trying to launch TrackMate? Are you using the
> latest TrackMate master[1]? When I run this class in Eclipse, it
> works for me - launching TrackMate and opening the sample image
> (although I did have to change the path to 
> http://fiji.sc/samples/FakeTracks.tif)
> 
> >This is the exception:
> >http://pastebin.com/A3N5LQBw
> 
> Note that this exception message includes suggested debugging and
> workaround options. It may be sufficient to add the suggested static
> initializer.
> 
> >However, this just leads to another exception:
> >http://pastebin.com/m0VCTZ4S
> 
> My first guess would be a class path problem with the way you are
> launching TrackMate. Also, it may be helpful to lean on the Fiji
> Debug launcher[2] to set things up properly. If you can share the
> exact command you used to launch (or your IDE environment) I can try
> to reproduce and debug.
> 
> Best,
> Mark
> 
> [1] https://github.com/fiji/TrackMate/commits/master
> [2] 
> http://imagej.net/Developing_Fiji_in_Eclipse#Running_and_Debugging
> 
> On Sat, Jul 11, 2015 at 4:17 AM, Thorsten Wagner <
> wagner at biomedical-imaging.de> wrote:
> > Just an additional information:
> > 
> > I tried to start it by imagej2:
> > 
> > net.imagej.Main.main(args);
> > new TrackMatePlugIn_().run( "/home/thorsten/samples/FakeTracks.tif"
> > );
> > 
> > However, this just leads to another exception:
> > http://pastebin.com/m0VCTZ4S
> > 
> > Cheers,
> > Thorsten
> > 
> > Am Samstag, den 11.07.2015, 11:14 +0200 schrieb Thorsten Wagner:
> > > Dear List, dear Brian,
> > >
> > > we currently came across problems with ImageJ-OPs and TrackMate.
> > >
> > > For some reasons we have to start TrackMate by the following main
> > > method:
> > > https://github.com/thorstenwagner/TrackMate/blob/master/src/main/
> > java
> > > /f
> > > iji/plugin/trackmate/TrackMatePlugIn_.java#L134
> > >
> > > However, this always leads to the a exception at this line:
> > > https://github.com/thorstenwagner/TrackMate/blob/master/src/main/
> > java
> > > /f
> > >
> > iji/plugin/trackmate/detection/findmaxima/FindMaximaSpotDetector.ja
> > va
> > > #L
> > > 123
> > >
> > > This is the exception:
> > > http://pastebin.com/A3N5LQBw
> > >
> > > Any ideas?
> > >
> > > Cheers,
> > > Thorsten
> > 
> > _______________________________________________
> > ImageJ-devel mailing list
> > ImageJ-devel at imagej.net
> > http://imagej.net/mailman/listinfo/imagej-devel
> > 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://imagej.net/pipermail/imagej-devel/attachments/20150714/5b532d4e/attachment-0001.html>