[ImageJ-devel] Save OME Tiff with File > Export > Image

[Hadrien Mary]

Hi,

I'd like to report a bug I noticed some time ago.

I have an error when I try to save an OME Tiff file with File > Export
> Image (to save it as an OME Tiff format). Note that it works well
when the saved image is not an OME Tiff file.

The bug is weird.

First when I click File > Export > Image, gtk file manager open to ask
where I want to save the file. The default filename is test.ometif
(instead of test.ome.tif, current filename). I change the filename to
be test.ome.tif (same bug when I don't change it) and when I click
"save", I have this message :

------------------------------------
(Fiji Is Just) ImageJ 2.0.0-rc-21/1.49m; Java 1.7.0_65 [64-bit]; Linux
3.13.0-44-generic; 80MB of 3600MB (2%)

java.lang.RuntimeException: java.util.concurrent.ExecutionException:
java.lang.IllegalArgumentException
at net.imagej.legacy.DefaultLegacyService.runLegacyCompatibleCommand(DefaultLegacyService.java:256)
at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:160)
at ij.IJ.runPlugIn(IJ.java)
at ij.Executer.runCommand(Executer.java:131)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.util.concurrent.ExecutionException:
java.lang.IllegalArgumentException
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:188)
at net.imagej.legacy.DefaultLegacyService.runLegacyCompatibleCommand(DefaultLegacyService.java:252)
... 5 more
Caused by: java.lang.IllegalArgumentException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.scijava.util.ReflectedUniverse.exec(ReflectedUniverse.java:314)
at net.imagej.DefaultDatasetService.save(DefaultDatasetService.java:327)
at net.imagej.DefaultDatasetService.save(DefaultDatasetService.java:310)
at net.imagej.plugins.commands.io.SaveAsImage.run(SaveAsImage.java:101)
at org.scijava.command.CommandModule.run(CommandModule.java:201)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
... 1 more
------------------------------------

I currently use BF exporter function which is working well for my
daily use. So don't rush on this.

Thank you

--
Hadrien Mary

Ph.D student in Biology
Tournier-Gachet Team
CNRS - LBCMCP - UMR 5088

Université de Toulouse - Bât. 4R3B1
118, route de Narbonne - 31062 Toulouse