[ImageJ-devel] failed to run imageJ2

Mohamed Tleis mohammedtleis at hotmail.com
Fri Jun 14 10:09:41 CDT 2013 

I had to create the io.scif jar file to solve this issue. I think it 
would be nice to be included in the next release in the jars folder.

On 06/14/2013 02:02 PM, Mohamed Tleis wrote:
> Dear ImageJ Developers,
>
> I downloaded the latest version of imageJ2 beta 7, and created a very 
> simple program to run imageJ as follows:
>
> public static void main(String args[])
> {
>     final ImageJ ij = imagej.Main.launch(args);
> }
>
> Unfortunately I failed to do so (check full output below).
> Apparantly it is not able to locate the following class:
> java.lang.NoClassDefFoundError: io/scif/io/img/ImgIOException
> must I include an additional library?
>
>
> WARN: Ignoring non-Maven build directory: 
> /home/mohamed/NetBeansProjects/selectCellPlugin/build/classes
> [INFO] Created service: org.scijava.log.StderrLogService
> [INFO] Created service: org.scijava.thread.DefaultThreadService
> [INFO] Created service: org.scijava.event.DefaultEventService
> [WARNING] Invalid service: imagej.console.DefaultConsoleService
> [INFO] Found 356 plugins.
> [INFO] Created service: org.scijava.plugin.DefaultPluginService
> [INFO] Created service: imagej.module.DefaultModuleService
> [INFO] Created service: imagej.command.DefaultCommandService
> [INFO] Created service: imagej.core.commands.app.CoreAppEventService
> [INFO] Created service: org.scijava.object.DefaultObjectService
> [INFO] Created service: imagej.display.DefaultDisplayService
> [INFO] Created service: imagej.data.display.DefaultImageDisplayService
> [INFO] Created service: imagej.core.commands.typechange.TypeChangeService
> [INFO] Created service: 
> imagej.core.commands.restructure.SplitChannelsContextMonitor
> [INFO] Created service: imagej.menu.DefaultMenuService
> [INFO] Created service: imagej.options.DefaultOptionsService
> [INFO] Configuring platform: imagej.platform.DefaultPlatform
> [INFO] Created service: imagej.platform.DefaultPlatformService
> [INFO] Created service: imagej.script.DefaultScriptService
> [INFO] Found 2 TextFormat plugins.
> [INFO] Created service: imagej.text.DefaultTextService
> [INFO] Found 2 applications.
> [INFO] Created service: org.scijava.app.DefaultAppService
> [INFO] Created service: org.scijava.app.DefaultStatusService
> [INFO] Found 25 Tool plugins.
> [INFO] Created service: imagej.tool.DefaultToolService
> [INFO] Found [class='imagej.ui.swing.widget.SwingMessageWidget', 
> priority=100.0, enabled=true, pluginType=InputWidget, 
> class='imagej.ui.swing.widget.SwingChoiceRadioWidget', priority=1.0, 
> enabled=true, pluginType=InputWidget, 
> class='imagej.ui.swing.widget.SwingTextFieldWidget', priority=0.0, 
> enabled=true, pluginType=InputWidget, 
> class='imagej.ui.swing.widget.SwingButtonWidget', priority=0.0, 
> enabled=true, pluginType=InputWidget, 
> class='imagej.ui.swing.widget.SwingColorWidget', priority=0.0, 
> enabled=true, pluginType=InputWidget, 
> class='imagej.ui.swing.widget.SwingNumberWidget', priority=0.0, 
> enabled=true, pluginType=InputWidget, 
> class='imagej.ui.swing.widget.SwingObjectWidget', priority=0.0, 
> enabled=true, pluginType=InputWidget, 
> class='imagej.ui.swing.widget.SwingToggleWidget', priority=0.0, 
> enabled=true, pluginType=InputWidget, 
> class='imagej.ui.swing.widget.SwingChoiceWidget', priority=0.0, 
> enabled=true, pluginType=InputWidget, 
> class='imagej.ui.swing.widget.SwingFileWidget', priority=0.0, 
> enabled=true, pluginType=InputWidget] InputWidget plugins.
> [INFO] Created service: imagej.widget.DefaultWidgetService
> [INFO] Created service: org.scijava.event.DefaultEventHistory
> [INFO] Created service: imagej.data.animation.DefaultAnimationService
> [INFO] Found 2 AutoscaleMethod plugins.
> [INFO] Created service: imagej.data.autoscale.DefaultAutoscaleService
> [INFO] Created service: imagej.data.DefaultDatasetService
> [INFO] Created service: imagej.data.display.DefaultInputService
> [INFO] Created service: imagej.ui.common.awt.AWTRenderingService
> [INFO] Created service: imagej.data.display.DefaultOverlayService
> [INFO] Created service: imagej.data.display.DefaultWindowService
> [INFO] Created service: imagej.data.lut.DefaultLUTService
> [INFO] Created service: imagej.data.measure.DefaultMeasurementService
> [INFO] Created service: imagej.data.measure.DefaultStatisticsService
> [INFO] Found 13 CalculatorOp plugins.
> [INFO] Created service: imagej.data.operator.DefaultCalculatorService
> [INFO] Created service: imagej.data.sampler.DefaultSamplerService
> [INFO] Found 17 ThresholdMethod plugins.
> [INFO] Created service: imagej.data.threshold.DefaultThresholdService
> [WARNING] Invalid service: imagej.io.DefaultIOService
> [INFO] Created service: imagej.io.DefaultRecentFileService
> [ERROR] Cannot create plugin: 
> class='imagej.io.dnd.ImageFileDragAndDropHandler', priority=-100.0, 
> enabled=true, pluginType=DragAndDropHandler
> java.lang.NoClassDefFoundError: io/scif/io/img/ImgIOException
>     at java.lang.Class.getDeclaredConstructors0(Native Method)
>     at java.lang.Class.privateGetDeclaredConstructors(Class.java:2404)
>     at java.lang.Class.getConstructor0(Class.java:2714)
>     at java.lang.Class.newInstance0(Class.java:343)
>     at java.lang.Class.newInstance(Class.java:325)
>     at org.scijava.plugin.PluginInfo.createInstance(PluginInfo.java:320)
>     at 
> org.scijava.plugin.DefaultPluginService.createInstance(DefaultPluginService.java:240)
>     at 
> org.scijava.plugin.DefaultPluginService.createInstances(DefaultPluginService.java:229)
>     at 
> org.scijava.plugin.DefaultPluginService.createInstancesOfType(DefaultPluginService.java:220)
>     at 
> imagej.plugin.AbstractSingletonService.createInstances(AbstractSingletonService.java:80)
>     at 
> imagej.plugin.AbstractSingletonService.initialize(AbstractSingletonService.java:74)
>     at 
> org.scijava.service.ServiceHelper.createService(ServiceHelper.java:224)
>     at 
> org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:176)
>     at 
> org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:155)
>     at 
> org.scijava.service.ServiceHelper.loadServices(ServiceHelper.java:126)
>     at org.scijava.Context.<init>(Context.java:162)
>     at org.scijava.Context.<init>(Context.java:120)
>     at org.scijava.Context.<init>(Context.java:81)
>     at org.scijava.Context.<init>(Context.java:71)
>     at imagej.ImageJ.<init>(ImageJ.java:97)
>     at imagej.Main.launch(Main.java:56)
>     at selectcellplugin.test12.main(test12.java:46)
> Caused by: java.lang.ClassNotFoundException: 
> io.scif.io.img.ImgIOException
>     at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
>     at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
>     at java.security.AccessController.doPrivileged(Native Method)
>     at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
>     at java.lang.ClassLoader.loadClass(ClassLoader.java:423)
>     at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
>     at java.lang.ClassLoader.loadClass(ClassLoader.java:356)
>     ... 22 more
> [INFO] Found 3 DragAndDropHandler plugins.
> [INFO] Created service: imagej.ui.dnd.DefaultDragAndDropService
> [INFO] Discovered user interface: imagej.ui.swing.sdi.SwingUI
> [INFO] Discovered user interface: imagej.ui.swing.mdi.SwingMdiUI
> [INFO] Created service: imagej.ui.DefaultUIService
> [INFO] Found 4 upload mechanisms.
> [INFO] Created service: imagej.updater.core.DefaultUploaderService
> [WARNING] Overridden plugin ij.plugin.LutLoader("3-3-2 RGB") is 
> blacklisted
> [WARNING] Overridden plugin ij.plugin.AboutBox is blacklisted
> [WARNING] Overridden plugin ij.plugin.Commands("quit") is blacklisted
> [INFO] Found 247 legacy plugins (plus 133 ignored).
> [INFO] Created service: imagej.legacy.DefaultLegacyService
> [INFO] Created service: imagej.ui.swing.SwingIconService
> [INFO] Found 8 JHotDraw adapters.
> [INFO] Created service: imagej.ui.swing.overlay.JHotDrawService
> [INFO] Created service: imagej.ui.common.awt.AWTScreenCaptureService
> [INFO] Created service: imagej.render.DummyRenderingService
> [INFO] Created service: imagej.data.display.DummyScreenCaptureService
> Exception in thread "main" org.scijava.NoSuchServiceException: Service 
> imagej.console.ConsoleService not found.
>     at org.scijava.AbstractGateway.checkNull(AbstractGateway.java:71)
>     at org.scijava.AbstractGateway.get(AbstractGateway.java:55)
>     at imagej.ImageJ.console(ImageJ.java:177)
>     at imagej.Main.launch(Main.java:59)
>     at selectcellplugin.test12.main(test12.java:46)
> Java Result: 1
>
> Best Regards,
> M. Tleis
>
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>

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