[ImageJ-devel] opening a tif file problem

Mohamed Tleis mohammedtleis at hotmail.com
Tue Jul 30 11:33:38 CDT 2013


Dear Developers,

I wonder whether this is important for you.

Before the latest updates, I used to be able to open tif files with ij2. 
Now I am getting an error (see below for the warnings I get when loading 
ij launcher and the error after trying to open a "tif" file).

Note that If I switch to Legacy mode, open the image, then back into 
modern mode , things work fine.

However, I still am wondering if the Invalid services in the warning 
messages is something specific to my machine. Am I missing some package?

run:
...
log4j:WARN No appenders could be found for logger (io.scif.Format).
log4j:WARN Please initialize the log4j system properly.
...
[WARNING] Invalid service: imagej.data.lut.DefaultLUTService
....
[WARNING] Overridden plugin ij.plugin.AboutBox is blacklisted
[WARNING] Overridden plugin ij.plugin.Commands("quit") is blacklisted
...
[WARNING] Invalid service: io.scif.services.LuraWaveServiceImpl
[WARNING] Invalid service: ome.xml.services.DefaultOMEXMLMetadataService
[WARNING] Invalid service: ome.xml.services.OMEXMLServiceImpl
...
// Trying to open a tif file
[ERROR] Module threw exception
java.lang.NullPointerException
     at imagej.data.lut.io.LUTIOPlugin.supportsOpen(LUTIOPlugin.java:66)
     at imagej.io.DefaultIOService.getOpener(DefaultIOService.java:68)
     at imagej.io.DefaultIOService.open(DefaultIOService.java:87)
     at imagej.core.commands.io.OpenFile.run(OpenFile.java:87)
     at imagej.command.CommandModule.run(CommandModule.java:163)
     at imagej.module.ModuleRunner.run(ModuleRunner.java:169)
     at imagej.module.ModuleRunner.call(ModuleRunner.java:126)
     at imagej.module.ModuleRunner.call(ModuleRunner.java:67)
     at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
     at java.util.concurrent.FutureTask.run(FutureTask.java:166)
     at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
     at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
     at java.lang.Thread.run(Thread.java:722)

Best Regards,
Mohamed Tleis
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