[ImageJ-devel] Support for units in ImgLib2

Curtis Rueden ctrueden at wisc.edu
Mon Sep 17 15:08:32 CDT 2012


Hi all,


> Note that the support of units in Imglib2 was discussed a bit here:
> http://imagej.net/pipermail/imagej-devel/2012-March/000732.html


There hasn't been any progress on this old topic of units yet, but I wanted
to mention that for those interested, we have a ticket about it:
    http://trac.imagej.net/ticket/445

Currently it is slated for the next beta (2.0.0-beta5), but there is a lot
to do so I cannot promise it will make it in. But we will definitely need
to resolve the issue before the final 2.0.0 release.

Regards,
Curtis


On Mon, Jul 16, 2012 at 10:55 AM, Barry DeZonia <bdezonia at gmail.com> wrote:

> Curtis may not be able to respond to this topic in the near future. Note
> that the support of units in Imglib2 was discussed a bit here:
> http://imagej.net/pipermail/imagej-devel/2012-March/000732.html
>
>
> On Sun, Jul 15, 2012 at 3:16 PM, Jean-Yves Tinevez <tinevez at pasteur.fr>wrote:
>
>> On 13-Jul-12 09:39, Stephan Saalfeld wrote:
>>
>>> The other way round---no?
>>>
>>> ImagePlusImg is a container to use an existing ImagePlus transparently
>>> through ImgLib2, in other words a `non-copying' wrapper into another
>>> library's data.  ImgPlus is a construct that mimics ImageJ's ImagePlus
>>> in a sense that it combines any Img (ImageProcessor/ImageStack in ImageJ
>>> speak) with rudimentary though useful meta-data such as a name and
>>> linear calibration factors.  ImgPlus is most useful in the context of
>>> ImageJ2 where exactly that meta-data is needed.
>>>
>>
>>
>> Hi all,
>>
>> In the same line.
>>
>> I modified ImagePlusAdapter so that the correct calibration values and
>> Axis type are determined from ImagePlus. I saw that there were a nice
>> AxisType class to identify dimensions. Is there a plan to have them store
>> also the dimension units (such as um, minutes, etc..)?
>> What does IJ2 guys need here?
>>
>> Cheers
>>
>> jy
>>
>> --
>> Please avoid top-posting, and please make sure to reply-to-all!
>>
>> Mailing list web interface: http://groups.google.com/**group/fiji-devel<http://groups.google.com/group/fiji-devel>
>>
>
>  --
> Please avoid top-posting, and please make sure to reply-to-all!
>
> Mailing list web interface: http://groups.google.com/group/fiji-devel
>
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