[ImageJ-devel] Build failed in Jenkins: ImageJ #2903

Thu Mar 29 16:43:54 CDT 2012

See <http://jenkins.imagej.net/job/ImageJ/2903/changes>

Changes:

[Mark Hiner] Added support for ImgSaver#isCompressible

The SaveAsImage plugin now takes advantage of ImgSaver#isCompressible to
check its ImgPlus for potential compression requirements (of unknown
Axes of size > 2).

If compression will be required, which necessitates a change in the
ImgPlus structure, the user will be warned and provided a YES/NO dialog
option.

[Mark Hiner] SaveAs now Warns when overwriting

Previously a QUESTION type message was displayed to the user when
potentially overwriting an existing file. It now is a WARN type message.

[Mark Hiner] Added label to SaveAs dialog

The SaveAs... dialog box now says "File to save" instead of "OutputFile"
with no space.

[Mark Hiner] Save/Open Image display proper Error messages

When the Open and SaveAs plug-ins are handling errors, they now display
ERROR_MESSAGE type messages instead of the default type.

[Mark Hiner] Added initializer to SaveAsImage

To avoid persisting the Save paths in SaveAsImage plugin, we set the
File parameter to persist = false and instead use an initializer to
attempt to pull in the ImgPlus's source, if present.

[Mark Hiner] On errors, display dialog after logging

In case there is an exception during dialog display, we log first and
then display the errors received in the SaveAsImage plugin.

[Mark Hiner] Display errors on UI

OpenImage and SaveAsImage plug-ins now display caught error messages via
uiService.showDialog() when handling exceptions.

[Mark Hiner] Added AbstractImageHandler

AbstractImageHandler is a parent for OpenImage and SaveAsImage plug-ins.
It contains the StatusListener#statusUpdated() implementation that can
be shared between these and other plug-ins.

[Mark Hiner] Updated OpenImage plugin to use ome.scifio.img.*

Updated references from net.imglib2.io to ome.scifio.img for ImgOpener
and ImgIOException.

[Mark Hiner] Added StatusUpdates to SaveAsImage

The SaveAsImage plugin will now report status messages, following the
same conventions as the OpenImage plugin.

Note that SaveImage does not report statuses as it always delegates to
SaveAsImage.

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regular cursor : elapsed time = 293
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.403 sec
Running imagej.data.DatasetTest
[INFO ] Created service: imagej.event.DefaultEventService
[INFO ] Created service: imagej.object.DefaultObjectService
[INFO ] Created service: imagej.data.DefaultDatasetService
[INFO ] Created service: imagej.event.DefaultEventService
[INFO ] Created service: imagej.object.DefaultObjectService
[INFO ] Created service: imagej.data.DefaultDatasetService
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.018 sec

Results :

Tests run: 46, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/data/target/ij-data-2.0-SNAPSHOT.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/data/target/ij-data-2.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/net/imagej/ij-data/2.0-SNAPSHOT/ij-data-2.0-SNAPSHOT.jar
[INFO] [deploy:deploy {execution: default-deploy}]
[INFO] Retrieving previous build number from imagej.snapshots
Uploading: http://maven.imagej.net/content/repositories/snapshots/net/imagej/ij-data/2.0-SNAPSHOT/ij-data-2.0-20120329.214333-588.jar
Mar 29, 2012 4:43:48 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
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[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'artifact net.imagej:ij-data'
Mar 29, 2012 4:43:49 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Uploading project information for ij-data 2.0-20120329.214333-588
Mar 29, 2012 4:43:49 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'snapshot net.imagej:ij-data:2.0-SNAPSHOT'
Mar 29, 2012 4:43:49 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] ------------------------------------------------------------------------
[INFO] Building ImageJ Platform Framework
[INFO]    task-segment: [clean, deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [clean:clean {execution: default-clean}]
[INFO] Deleting /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/platform/target
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/platform/src/main/resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 19 source files to /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/platform/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/platform/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/platform/target/surefire-reports

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 T E S T S
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Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/platform/target/ij-platform-2.0-SNAPSHOT.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/platform/target/ij-platform-2.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/net/imagej/ij-platform/2.0-SNAPSHOT/ij-platform-2.0-SNAPSHOT.jar
[INFO] [deploy:deploy {execution: default-deploy}]
[INFO] Retrieving previous build number from imagej.snapshots
Uploading: http://maven.imagej.net/content/repositories/snapshots/net/imagej/ij-platform/2.0-SNAPSHOT/ij-platform-2.0-20120329.214333-588.jar
Mar 29, 2012 4:43:50 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
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15K uploaded  (ij-platform-2.0-20120329.214333-588.jar)
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'snapshot net.imagej:ij-platform:2.0-SNAPSHOT'
Mar 29, 2012 4:43:50 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'artifact net.imagej:ij-platform'
Mar 29, 2012 4:43:50 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Uploading project information for ij-platform 2.0-20120329.214333-588
Mar 29, 2012 4:43:50 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] ------------------------------------------------------------------------
[INFO] Building ImageJ User Interface Framework
[INFO]    task-segment: [clean, deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [clean:clean {execution: default-clean}]
[INFO] Deleting /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/ui/target
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/ui/src/main/resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 12 source files to /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/ui/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/ui/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/ui/target/surefire-reports

-------------------------------------------------------
 T E S T S
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Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/ui/target/ij-ui-2.0-SNAPSHOT.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/ui/target/ij-ui-2.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/net/imagej/ij-ui/2.0-SNAPSHOT/ij-ui-2.0-SNAPSHOT.jar
[INFO] [deploy:deploy {execution: default-deploy}]
[INFO] Retrieving previous build number from imagej.snapshots
Uploading: http://maven.imagej.net/content/repositories/snapshots/net/imagej/ij-ui/2.0-SNAPSHOT/ij-ui-2.0-20120329.214333-588.jar
Mar 29, 2012 4:43:52 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
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15K uploaded  (ij-ui-2.0-20120329.214333-588.jar)
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'snapshot net.imagej:ij-ui:2.0-SNAPSHOT'
Mar 29, 2012 4:43:52 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Uploading project information for ij-ui 2.0-20120329.214333-588
Mar 29, 2012 4:43:52 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'artifact net.imagej:ij-ui'
Mar 29, 2012 4:43:53 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] ------------------------------------------------------------------------
[INFO] Building ImageJ Core: I/O
[INFO]    task-segment: [clean, deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [clean:clean {execution: default-clean}]
[INFO] Deleting /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/io/target
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 11 source files to /data/devel/jenkins/jobs/ImageJ/workspace/imagej/core/io/target/classes
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] SaveAsImage.java:[113,21] cannot find symbol
symbol  : method isCompressible(net.imglib2.img.ImgPlus)
location: class ome.scifio.img.ImgSaver
[INFO] 1 error
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Compilation failure
SaveAsImage.java:[113,21] cannot find symbol
symbol  : method isCompressible(net.imglib2.img.ImgPlus)
location: class ome.scifio.img.ImgSaver

[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 25 seconds
[INFO] Finished at: Thu Mar 29 16:43:53 CDT 2012
[INFO] Final Memory: 85M/1470M
[INFO] ------------------------------------------------------------------------
Archiving artifacts
Performance: No threshold configured for making the test unstable
Performance: No threshold configured for making the test failure
Performance: Recording JUnit reports '**/TEST-*.xml'
Performance: Parsing JUnit report file TEST-imagej.object.ObjectIndexTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.ColorRGBTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.FileUtilsTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.UnitUtilsTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.DatasetTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.ExtentsTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.PositionTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.TestCursorSpeeds.xml
Performance: Parsing JUnit report file TEST-imagej.data.overlay.TestBinaryMaskOverlay.xml
Performance: Parsing JUnit report file TEST-imagej.ext.menu.ShadowMenuTest.xml
Performance: Parsing JUnit report file TEST-imagej.legacy.LegacyImageMapTest.xml
Performance: Parsing JUnit report file TEST-imagej.legacy.OverlayHarmonizerTest.xml
Performance: Parsing JUnit report file TEST-imagej.legacy.translate.LegacyUtilsTest.xml
Performance: Parsing JUnit report file TEST-imagej.updater.core.UpdaterTest.xml
Performance: File TEST-imagej.object.ObjectIndexTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.ColorRGBTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.FileUtilsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.UnitUtilsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.DatasetTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.ExtentsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.PositionTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.TestCursorSpeeds.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.overlay.TestBinaryMaskOverlay.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.ext.menu.ShadowMenuTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.legacy.LegacyImageMapTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.legacy.OverlayHarmonizerTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.legacy.translate.LegacyUtilsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.updater.core.UpdaterTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE