[ImageJ-devel] Build failed in Jenkins: Synchronize-with-ImageJ1 #1388

jenkins at loci.wisc.edu jenkins at loci.wisc.edu
Thu Mar 15 22:26:34 CDT 2012 

See <http://dev.loci.wisc.edu:8080/job/Synchronize-with-ImageJ1/1388/>

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[...truncated 280 lines...]
  inflating: source/ij/plugin/RGBStackConverter.java  
  inflating: source/ij/plugin/RGBStackMerge.java  
  inflating: source/ij/plugin/RandomOvals.txt  
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  inflating: source/ij/plugin/Resizer.java  
  inflating: source/ij/plugin/RoiReader.java  
  inflating: source/ij/plugin/ScaleBar.java  
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  inflating: source/ij/plugin/ScreenGrabber.java  
  inflating: source/ij/plugin/Selection.java  
  inflating: source/ij/plugin/SimpleCommands.java  
  inflating: source/ij/plugin/Slicer.java  
  inflating: source/ij/plugin/SpecifyROI.java  
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  inflating: source/ij/plugin/StackReducer.java  
  inflating: source/ij/plugin/StackReverser.java  
  inflating: source/ij/plugin/StackWriter.java  
  inflating: source/ij/plugin/Straightener.java  
  inflating: source/ij/plugin/SubstackMaker.java  
  inflating: source/ij/plugin/SurfacePlotter.java  
  inflating: source/ij/plugin/TextFileReader.java  
  inflating: source/ij/plugin/TextReader.java  
  inflating: source/ij/plugin/TextWriter.java  
  inflating: source/ij/plugin/ThreadLister.java  
  inflating: source/ij/plugin/Thresholder.java  
  inflating: source/ij/plugin/Timer.java  
  inflating: source/ij/plugin/URLOpener.java  
  inflating: source/ij/plugin/WandToolOptions.java  
  inflating: source/ij/plugin/WindowOrganizer.java  
  inflating: source/ij/plugin/XYCoordinates.java  
  inflating: source/ij/plugin/XY_Reader.java  
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  inflating: source/ij/plugin/filter/Filler.java  
  inflating: source/ij/plugin/filter/Filters.java  
  inflating: source/ij/plugin/filter/FractalBoxCounter.java  
  inflating: source/ij/plugin/filter/GaussianBlur.java  
  inflating: source/ij/plugin/filter/ImageMath.java  
  inflating: source/ij/plugin/filter/ImageProperties.java  
  inflating: source/ij/plugin/filter/Info.java  
  inflating: source/ij/plugin/filter/LineGraphAnalyzer.java  
  inflating: source/ij/plugin/filter/LutApplier.java  
  inflating: source/ij/plugin/filter/LutViewer.java  
  inflating: source/ij/plugin/filter/MaximumFinder.java  
  inflating: source/ij/plugin/filter/ParticleAnalyzer.java  
  inflating: source/ij/plugin/filter/PlugInFilter.java  
  inflating: source/ij/plugin/filter/PlugInFilterRunner.java  
  inflating: source/ij/plugin/filter/Printer.java  
  inflating: source/ij/plugin/filter/Profiler.java  
  inflating: source/ij/plugin/filter/RGBStackSplitter.java  
  inflating: source/ij/plugin/filter/RankFilters.java  
  inflating: source/ij/plugin/filter/Resizer.java  
  inflating: source/ij/plugin/filter/RoiWriter.java  
  inflating: source/ij/plugin/filter/Rotator.java  
  inflating: source/ij/plugin/filter/SaltAndPepper.java  
  inflating: source/ij/plugin/filter/ScaleDialog.java  
  inflating: source/ij/plugin/filter/Shadows.java  
  inflating: source/ij/plugin/filter/StackLabeler.java  
  inflating: source/ij/plugin/filter/ThresholdToSelection.java  
  inflating: source/ij/plugin/filter/Transformer.java  
  inflating: source/ij/plugin/filter/Translator.java  
  inflating: source/ij/plugin/filter/UnsharpMask.java  
  inflating: source/ij/plugin/filter/Writer.java  
  inflating: source/ij/plugin/filter/XYWriter.java  
  inflating: source/ij/plugin/filter/ZAxisProfiler.java  
  inflating: source/ij/plugin/frame/Channels.java  
  inflating: source/ij/plugin/frame/ColorPicker.java  
  inflating: source/ij/plugin/frame/ColorThresholder.java  
  inflating: source/ij/plugin/frame/ContrastAdjuster.java  
  inflating: source/ij/plugin/frame/Editor.java  
  inflating: source/ij/plugin/frame/Fitter.java  
  inflating: source/ij/plugin/frame/Fonts.java  
  inflating: source/ij/plugin/frame/LineWidthAdjuster.java  
  inflating: source/ij/plugin/frame/MemoryMonitor.java  
  inflating: source/ij/plugin/frame/PasteController.java  
  inflating: source/ij/plugin/frame/PlugInFrame.java  
  inflating: source/ij/plugin/frame/Recorder.java  
  inflating: source/ij/plugin/frame/RoiManager.java  
  inflating: source/ij/plugin/frame/SyncWindows.java  
  inflating: source/ij/plugin/frame/ThresholdAdjuster.java  
  inflating: source/ij/plugin/tool/ArrowTool.java  
  inflating: source/ij/plugin/tool/MacroToolRunner.java  
  inflating: source/ij/plugin/tool/OverlayBrushTool.java  
  inflating: source/ij/plugin/tool/PixelInspectionTool.java  
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  inflating: source/ij/process/AutoThresholder.java  
  inflating: source/ij/process/BinaryProcessor.java  
  inflating: source/ij/process/Blitter.java  
  inflating: source/ij/process/ByteBlitter.java  
  inflating: source/ij/process/ByteProcessor.java  
  inflating: source/ij/process/ByteStatistics.java  
  inflating: source/ij/process/ColorBlitter.java  
  inflating: source/ij/process/ColorProcessor.java  
  inflating: source/ij/process/ColorStatistics.java  
  inflating: source/ij/process/DownsizeTable.java  
  inflating: source/ij/process/EllipseFitter.java  
  inflating: source/ij/process/FHT.java  
  inflating: source/ij/process/FloatBlitter.java  
  inflating: source/ij/process/FloatPolygon.java  
  inflating: source/ij/process/FloatProcessor.java  
  inflating: source/ij/process/FloatStatistics.java  
  inflating: source/ij/process/FloodFiller.java  
  inflating: source/ij/process/ImageConverter.java  
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  inflating: source/ij/process/LUT.java  
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  inflating: source/ij/process/StackConverter.java  
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  inflating: source/ij/process/TypeConverter.java  
  inflating: source/ij/text/TextCanvas.java  
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  inflating: source/ij/text/TextWindow.java  
  inflating: source/ij/util/DicomTools.java  
  inflating: source/ij/util/Java2.java  
  inflating: source/ij/util/StringSorter.java  
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  inflating: source/images/about.jpg  
  inflating: source/images/microscope.gif  
  inflating: source/macros/AddParticles.txt  
  inflating: source/macros/ConvertStackToBinary.txt  
  inflating: source/macros/EnlargeSelection.txt  
  inflating: source/macros/HyperStackMaker.txt  
  inflating: source/macros/LUTMenuTool.txt  
  inflating: source/macros/Macro_Tool.txt  
  inflating: source/macros/MoveSelection.txt  
  inflating: source/macros/RotateSelection.txt  
  inflating: source/macros/Search.txt  
  inflating: source/macros/SprayCanTool.txt  
  inflating: source/macros/Stack Tools.txt  
  inflating: source/macros/StartupMacros.txt  
  inflating: source/macros/TimeStamp.ijm  
  inflating: source/plugins/JavaScriptEvaluator.class  
  inflating: source/plugins/JavaScriptEvaluator.source  
  inflating: source/plugins/MacAdapter.class  
  inflating: source/plugins/MacAdapter.source  
  inflating: source/plugins/MacClipboard.class  
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  inflating: source/release-notes.html  
+ cd source
+ pwd
+ export GIT_WORK_TREE=/data/devel/jenkins/jobs/Synchronize-with-ImageJ1/workspace/tmpCommit/source
+ find ( -name .DS_Store -name .FBCIndex -o -name .FBCLockFolder -o -name .gdb_history ) -exec rm -rf {} ;
find: `./.FBCLockFolder': No such file or directory
+ echo No temporary files removed
No temporary files removed
+ find -type f -print0
+ xargs -0 perl /data/devel/jenkins/jobs/Synchronize-with-ImageJ1/workspace/tools/mac2unix.pl
+ find -type f -print0
+ xargs -0 git update-index --add
+ git write-tree
+ tree=0601a6cb2a71104cafc4509ddfa9a2e4d31422aa
+ export GIT_AUTHOR_NAME=Wayne Rasband
+ export GIT_AUTHOR_EMAIL=wsr at nih.gov
+ git commit-tree 0601a6cb2a71104cafc4509ddfa9a2e4d31422aa -p efe8bfd57612b0648f65b99ce35a32e4cee50611
+ commit=a71a382893340728ffb13822922a9324ea644431
+ git update-ref refs/heads/imagej a71a382893340728ffb13822922a9324ea644431
+ cd ../..
+ rm -rf tmpCommit tmpIndex
+ dirname tools/jenkins-job.sh
+ sh -x tools/sync-with-imagej.sh
+ URL=git://repo.or.cz/imageja.git
+ BRANCH=refs/heads/master
+ IJ1BRANCH=refs/heads/imagej
+ NEED_TO_UPDATE_WORKING_TREE=
+ git config --bool core.bare
+ test false = true
+ git symbolic-ref HEAD
+ test refs/heads/master != 
+ git fetch git://repo.or.cz/imageja.git refs/heads/master
+ ERROR=From git://repo.or.cz/imageja
 * branch            master     -> FETCH_HEAD
+ git rev-parse refs/heads/master
+ HEAD=c37d561206e0cf902b72df3d46f34cb7c03aeb81
+ test -z 
+ git rev-parse refs/heads/imagej
+ IJ1HEAD=a71a382893340728ffb13822922a9324ea644431
+ git merge-base a71a382893340728ffb13822922a9324ea644431 c37d561206e0cf902b72df3d46f34cb7c03aeb81
+ test a71a382893340728ffb13822922a9324ea644431 != efe8bfd57612b0648f65b99ce35a32e4cee50611
+ git log -1 --pretty=format:%s a71a382893340728ffb13822922a9324ea644431
+ sed -n s/^[^0-9]*\([^ 0-9A-Za-z] \)\?\([1-9][\.0-9]*.\)[^0-9A-Za-z].*$/\2/p
+ VERSION=1.46i
+ git rev-parse --git-dir
+ export GIT_INDEX_FILE=.git/IJ1INDEX
+ git read-tree a71a382893340728ffb13822922a9324ea644431
+ git show c37d561206e0cf902b72df3d46f34cb7c03aeb81:pom.xml
+ sed /^\t</s/\(<version>\).*\(<\/version>\)/\11.46i\2/
+ git hash-object -w .git/IJ1INDEX.pom.new
+ POMHASH=3f40a2deb1986031c1d824f839b7cc176b0bac71
+ printf 100644 3f40a2deb1986031c1d824f839b7cc176b0bac71 0\tpom.xml\n
+ git rev-parse c37d561206e0cf902b72df3d46f34cb7c03aeb81:.gitignore
+ GITIGNORE=beef00d016539f0af7e0cb61be0ef1028cc8db48
+ printf 100644 beef00d016539f0af7e0cb61be0ef1028cc8db48 0\t.gitignore\n
+ git ls-files --stage
+ mv .git/IJ1INDEX .git/IJ1INDEX.old
+ sed -e s~\t\(.*\.java\)$~\tsrc/main/java/\1~ -e s~\tplugins/\(.*\)\.source$~\tsrc/main/java/\1.java~ -e s~\t\(IJ_Props.txt\|macros/\)~\tsrc/main/resources/\1~ -e s~\timages/~\tsrc/main/resources/~ -e s~\t\(MANIFEST.MF\)$~\tsrc/main/resources/META-INF/\1~ -e /\t\(plugins\/.*\.class\|.FBCIndex\|ij\/plugin\/RandomOvals.txt\)$/d
+ git update-index --index-info
+ echo Synchronize with ImageJ 1.46i
+ git write-tree
+ TREE=72cb796cc48a270f4bb2f2f95fb61b33d2b45325
+ git commit-tree 72cb796cc48a270f4bb2f2f95fb61b33d2b45325 -p c37d561206e0cf902b72df3d46f34cb7c03aeb81 -p a71a382893340728ffb13822922a9324ea644431
+ NEWHEAD=cb34df35bc9f7a0a36bce8e82e93db0887b41fe0
+ git update-ref -m Synchronize with ImageJ1 refs/heads/master cb34df35bc9f7a0a36bce8e82e93db0887b41fe0 c37d561206e0cf902b72df3d46f34cb7c03aeb81
+ test -z 
+ git push git at dev.imagejdev.org:imageja.git imagej master
+ ERR=To git at dev.imagejdev.org:imageja.git
   efe8bfd..a71a382  imagej -> imagej
 ! [rejected]        master -> master (non-fast-forward)
error: failed to push some refs to 'git at dev.imagejdev.org:imageja.git'
To prevent you from losing history, non-fast-forward updates were rejected
Merge the remote changes (e.g. 'git pull') before pushing again.  See the
'Note about fast-forwards' section of 'git push --help' for details.
+ echo To git at dev.imagejdev.org:imageja.git
   efe8bfd..a71a382  imagej -> imagej
 ! [rejected]        master -> master (non-fast-forward)
error: failed to push some refs to 'git at dev.imagejdev.org:imageja.git'
To prevent you from losing history, non-fast-forward updates were rejected
Merge the remote changes (e.g. 'git pull') before pushing again.  See the
'Note about fast-forwards' section of 'git push --help' for details.Could not push
To git at dev.imagejdev.org:imageja.git
   efe8bfd..a71a382  imagej -> imagej
 ! [rejected]        master -> master (non-fast-forward)
error: failed to push some refs to 'git at dev.imagejdev.org:imageja.git'
To prevent you from losing history, non-fast-forward updates were rejected
Merge the remote changes (e.g. 'git pull') before pushing again.  See the
'Note about fast-forwards' section of 'git push --help' for details.Could not push
+ exit 1

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