[ImageJ-devel] Fwd: IJ2 work/LUTs

Curtis Rueden ctrueden at wisc.edu
Fri Aug 10 14:39:39 CDT 2012


Hi all,

Aivar and I chatted, and we have a plan for improving the LUT API.

We are going to migrate ImageJ2's color classes into ImgLib2, into
net.imglib2.display along side ColorTable / ColorTable8 / ColorTable16, so
that those color tables classes can make use of them. Specifically, the
following classes from ImageJ2 will migrate:
  * imagej.util.ColorRGB
  * imagej.util.ColorRGBA
  * imagej.util.Colors
  * imagej.data.display.ColorTables

These four classes are useful general-purpose color classes that fit in
well with ImgLib2's ColorTable API, and will allow us to provide better LUT
functionality in general. Aivar can elaborate further on technical details
if anyone else is interested.

Regards,
Curtis


On Tue, Aug 7, 2012 at 1:58 PM, Aivar Grislis <grislis at wisc.edu> wrote:

>  I meant to send this to the imagej-devel list...
>
>
> -------- Original Message --------  Subject: IJ2 work/LUTs  Date: Tue, 07
> Aug 2012 13:45:04 -0500  From: Aivar Grislis <grislis at wisc.edu><grislis at wisc.edu>  To:
> imagej-devel at imagejdev.org, Curtis Rueden <ctrueden at wisc.edu><ctrueden at wisc.edu>
>
> I've been looking at IJ2 trying to figure out how SLIM Plugin fits in.
> I was looking at the LUT code & am interested in refactoring it.
>
> I found some non-linearity bugs in the way LUTs are applied in the
> AutoContrast and DefaultImageDisplay plugins that I could fix.
>
> The LUT API could be improved.  There are two kinds of LUTs, ColorTable8
> and ColorTable16, the former is what's being used as a LUT, the latter
> is in the codebase but not really used or displayed AFAIK.
>
> This could be a Service or other Plugin.  I would consolidate the
> RealLUTConverter class into LUTs, LUTs would contain a ColorTable, the
> API might be something like this:
>
> // constructor
> LUT(ColorTable colorTable);
>
> // given a min/max range for the LUT, what is the color for current value?
> ARGBType lookup(double min, double max, double value);
>
> // get a swath of colors to use to display the LUT
> ARGBType[] getColors(int bins);
>
> Refactoring this isn't essential to SLIM Plugin, but it might be a good
> way to get up to speed with IJ2 work.
>
> Aivar
>
>
>
>
>
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