[ImageJ-devel] Build failed in Jenkins: ImageJ #3067

Mon Apr 30 14:36:51 CDT 2012

See <http://jenkins.imagej.net/job/ImageJ/3067/changes>

Changes:

[Barry DeZonia] Update syntax to match latest Imglib version

------------------------------------------
[...truncated 1922 lines...]
java.awt.HeadlessException: 
No X11 DISPLAY variable was set, but this program performed an operation which requires it.
	at java.awt.GraphicsEnvironment.checkHeadless(GraphicsEnvironment.java:173)
	at java.awt.Window.<init>(Window.java:476)
	at java.awt.Frame.<init>(Frame.java:419)
	at ij.ImageJ.<init>(ImageJ.java:132)
	at ij.ImageJ.<init>(ImageJ.java:120)
	at imagej.legacy.LegacyService.<init>(LegacyService.java:127)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:532)
	at imagej.service.ServiceHelper.createService(ServiceHelper.java:186)
	at imagej.service.ServiceHelper.createExactService(ServiceHelper.java:150)
	at imagej.service.ServiceHelper.loadService(ServiceHelper.java:132)
	at imagej.service.ServiceHelper.loadServices(ServiceHelper.java:110)
	at imagej.ImageJ.createContext(ImageJ.java:115)
	at imagej.ImageJ.createContext(ImageJ.java:81)
	at imagej.legacy.OverlayHarmonizerTest.testCreateBinaryMaskROI(OverlayHarmonizerTest.java:372)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:616)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:76)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
	at org.junit.runners.ParentRunner$3.run(ParentRunner.java:193)
	at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191)
	at org.junit.runners.ParentRunner.access$000(ParentRunner.java:42)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:236)
	at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:53)
	at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:123)
	at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:104)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:616)
	at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:164)
	at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:110)
	at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:172)
	at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcessWhenForked(SurefireStarter.java:104)
	at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:70)
[WARN ] Could not load launcher config file /data/devel/jenkins/jobs/ImageJ/workspace/core/core/ImageJ.cfg
[INFO ] Created service: imagej.legacy.LegacyService
Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.966 sec
Running imagej.legacy.LegacyImageMapTest
[INFO ] Created service: imagej.event.DefaultEventService
[INFO ] Created service: imagej.object.DefaultObjectService
[INFO ] Created service: imagej.data.DefaultDatasetService
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 sec
Running imagej.legacy.translate.LegacyUtilsTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec

Results :

Tests run: 15, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/ImageJ/workspace/core/legacy/target/ij-legacy-2.0.0-SNAPSHOT.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/ImageJ/workspace/core/legacy/target/ij-legacy-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/net/imagej/ij-legacy/2.0.0-SNAPSHOT/ij-legacy-2.0.0-SNAPSHOT.jar
[INFO] [deploy:deploy {execution: default-deploy}]
[INFO] Retrieving previous build number from imagej.snapshots
Uploading: http://maven.imagej.net/content/repositories/snapshots/net/imagej/ij-legacy/2.0.0-SNAPSHOT/ij-legacy-2.0.0-20120430.193558-134.jar
Apr 30, 2012 2:36:45 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
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91K uploaded  (ij-legacy-2.0.0-20120430.193558-134.jar)
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'artifact net.imagej:ij-legacy'
Apr 30, 2012 2:36:46 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Uploading project information for ij-legacy 2.0.0-20120430.193558-134
Apr 30, 2012 2:36:46 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'snapshot net.imagej:ij-legacy:2.0.0-SNAPSHOT'
Apr 30, 2012 2:36:46 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] ------------------------------------------------------------------------
[INFO] Building ImageJ POM: Core Plugins
[INFO]    task-segment: [clean, deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [clean:clean {execution: default-clean}]
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/ImageJ/workspace/core/plugins/pom.xml to /var/lib/jenkins/.m2/repository/net/imagej/pom-ij-core-plugins/2.0.0-SNAPSHOT/pom-ij-core-plugins-2.0.0-SNAPSHOT.pom
[INFO] [deploy:deploy {execution: default-deploy}]
[INFO] Retrieving previous build number from imagej.snapshots
Uploading: http://maven.imagej.net/content/repositories/snapshots/net/imagej/pom-ij-core-plugins/2.0.0-SNAPSHOT/pom-ij-core-plugins-2.0.0-20120430.193558-134.pom
Apr 30, 2012 2:36:46 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
1/1K
1K uploaded  (pom-ij-core-plugins-2.0.0-20120430.193558-134.pom)
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'snapshot net.imagej:pom-ij-core-plugins:2.0.0-SNAPSHOT'
Apr 30, 2012 2:36:47 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'artifact net.imagej:pom-ij-core-plugins'
Apr 30, 2012 2:36:47 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] ------------------------------------------------------------------------
[INFO] Building ImageJ Core Plugins: Application
[INFO]    task-segment: [clean, deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [clean:clean {execution: default-clean}]
[INFO] Deleting /data/devel/jenkins/jobs/ImageJ/workspace/core/plugins/app/target
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 4 resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 7 source files to /data/devel/jenkins/jobs/ImageJ/workspace/core/plugins/app/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/ImageJ/workspace/core/plugins/app/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/ImageJ/workspace/core/plugins/app/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/ImageJ/workspace/core/plugins/app/target/ij-plugins-app-2.0.0-SNAPSHOT.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/ImageJ/workspace/core/plugins/app/target/ij-plugins-app-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/net/imagej/ij-plugins-app/2.0.0-SNAPSHOT/ij-plugins-app-2.0.0-SNAPSHOT.jar
[INFO] [deploy:deploy {execution: default-deploy}]
[INFO] Retrieving previous build number from imagej.snapshots
Uploading: http://maven.imagej.net/content/repositories/snapshots/net/imagej/ij-plugins-app/2.0.0-SNAPSHOT/ij-plugins-app-2.0.0-20120430.193558-134.jar
Apr 30, 2012 2:36:48 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
4/20K
8/20K
12/20K
16/20K
20/20K
20/20K
20K uploaded  (ij-plugins-app-2.0.0-20120430.193558-134.jar)
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'snapshot net.imagej:ij-plugins-app:2.0.0-SNAPSHOT'
Apr 30, 2012 2:36:48 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Uploading project information for ij-plugins-app 2.0.0-20120430.193558-134
Apr 30, 2012 2:36:48 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] Uploading repository metadata for: 'artifact net.imagej:ij-plugins-app'
Apr 30, 2012 2:36:49 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] ------------------------------------------------------------------------
[INFO] Building ImageJ Core Plugins: Data
[INFO]    task-segment: [clean, deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [clean:clean {execution: default-clean}]
[INFO] Deleting /data/devel/jenkins/jobs/ImageJ/workspace/core/plugins/data/target
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 82 source files to /data/devel/jenkins/jobs/ImageJ/workspace/core/plugins/data/target/classes
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] EquationDataValues.java:[125,10] parse(java.lang.String) in net.imglib2.ops.parse.RealEquationFunctionParser cannot be applied to (java.lang.String,net.imglib2.img.ImgPlus<capture#780 of ? extends net.imglib2.type.numeric.RealType<?>>)
[INFO] 1 error
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Compilation failure
EquationDataValues.java:[125,10] parse(java.lang.String) in net.imglib2.ops.parse.RealEquationFunctionParser cannot be applied to (java.lang.String,net.imglib2.img.ImgPlus<capture#780 of ? extends net.imglib2.type.numeric.RealType<?>>)

[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 56 seconds
[INFO] Finished at: Mon Apr 30 14:36:50 CDT 2012
[INFO] Final Memory: 111M/993M
[INFO] ------------------------------------------------------------------------
Archiving artifacts
Performance: No threshold configured for making the test unstable
Performance: No threshold configured for making the test failure
Performance: Recording JUnit reports '**/TEST-*.xml'
Performance: Parsing JUnit report file TEST-imagej.object.ObjectIndexTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.ColorRGBTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.FileUtilsTest.xml
Performance: Parsing JUnit report file TEST-imagej.util.UnitUtilsTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.DatasetTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.ExtentsTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.PositionTest.xml
Performance: Parsing JUnit report file TEST-imagej.data.TestCursorSpeeds.xml
Performance: Parsing JUnit report file TEST-imagej.data.overlay.TestBinaryMaskOverlay.xml
Performance: Parsing JUnit report file TEST-imagej.ext.menu.ShadowMenuTest.xml
Performance: Parsing JUnit report file TEST-imagej.legacy.LegacyImageMapTest.xml
Performance: Parsing JUnit report file TEST-imagej.legacy.OverlayHarmonizerTest.xml
Performance: Parsing JUnit report file TEST-imagej.legacy.translate.LegacyUtilsTest.xml
Performance: Parsing JUnit report file TEST-imagej.updater.core.UpdaterTest.xml
Performance: File TEST-imagej.object.ObjectIndexTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.ColorRGBTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.FileUtilsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.util.UnitUtilsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.DatasetTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.ExtentsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.PositionTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.TestCursorSpeeds.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.data.overlay.TestBinaryMaskOverlay.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.ext.menu.ShadowMenuTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.legacy.LegacyImageMapTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.legacy.OverlayHarmonizerTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.legacy.translate.LegacyUtilsTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
Performance: File TEST-imagej.updater.core.UpdaterTest.xml reported 0.0% of errors [SUCCESS]. Build status is: FAILURE