[ImageJ-devel] Build failed in Jenkins: ImgLib #667

Tue Apr 3 15:08:57 CDT 2012

Hi everyone,

[INFO] Compilation failure
> AnisotropicDiffusion3DExample.java:[51,32] invalid inferred types for T;
> inferred type does not conform to declared bound(s)
> inferred: java.lang.Object
> bound(s):
> java.lang.Object,net.imglib2.type.numeric.RealType<java.lang.Object>,net.imglib2.type.NativeType<java.lang.Object>
>

I have no idea how to fix this error message, though I have seen it a few
times before in ImageJ2. The problem comes up when a method has a T
parameter that cannot be resolved from the method arguments, but instead
must be passed forward some other way. In the case of ImageJ2, it comes up
a lot with the ImgOpener.openImg(String) method that has a T parameter in
the return type.

Here is an example of an ugly hack I recently did to avoid this issue:
    http://trac.imagej.net/changeset/5224

But that is really bad, since I really do not want the IOService to have a
type parameter at all.

Does anyone more intimately familiar with generics know how to deal with
this situation in a better way?

Regards,
Curtis

On Tue, Apr 3, 2012 at 2:03 PM, <jenkins at imagej.net> wrote:

> See <http://jenkins.imagej.net/job/ImgLib/667/changes>
>
> Changes:
>
> [Jean-Yves Tinevez] Fix compilation error in Jenkis for the anisotropic
> diffusion example
>
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> 161K uploaded  (imglib2-scripting-2.0-20120403.190159-275.jar)
> [INFO] Retrieving previous metadata from imagej.snapshots
> [INFO] Uploading repository metadata for: 'snapshot
> net.imglib2:imglib2-scripting:2.0-SNAPSHOT'
> Apr 3, 2012 2:03:27 PM
> org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
> INFO: basic authentication scheme selected
> [INFO] Retrieving previous metadata from imagej.snapshots
> [INFO] Uploading repository metadata for: 'artifact
> net.imglib2:imglib2-scripting'
> Apr 3, 2012 2:03:27 PM
> org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
> INFO: basic authentication scheme selected
> [INFO] Uploading project information for imglib2-scripting
> 2.0-20120403.190159-275
> Apr 3, 2012 2:03:27 PM
> org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
> INFO: basic authentication scheme selected
> [INFO]
> ------------------------------------------------------------------------
> [INFO] Building ImgLib2 Tests
> [INFO]    task-segment: [clean, deploy]
> [INFO]
> ------------------------------------------------------------------------
> [INFO] [clean:clean {execution: default-clean}]
> [INFO] Deleting
> /data/devel/jenkins/jobs/ImgLib/workspace/imglib2/tests/target
> [debug] execute contextualize
> [INFO] [resources:resources {execution: default-resources}]
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory
> /data/devel/jenkins/jobs/ImgLib/workspace/imglib2/tests/src/main/resources
> [INFO] [compiler:compile {execution: default-compile}]
> [INFO] No sources to compile
> [debug] execute contextualize
> [INFO] [resources:testResources {execution: default-testResources}]
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory
> /data/devel/jenkins/jobs/ImgLib/workspace/imglib2/tests/src/test/resources
> [INFO] [compiler:testCompile {execution: default-testCompile}]
> [INFO] Compiling 23 source files to
> /data/devel/jenkins/jobs/ImgLib/workspace/imglib2/tests/target/test-classes
> [INFO] -------------------------------------------------------------
> [ERROR] COMPILATION ERROR :
> [INFO] -------------------------------------------------------------
> [ERROR] AnisotropicDiffusion3DExample.java:[51,32] invalid inferred types
> for T; inferred type does not conform to declared bound(s)
> inferred: java.lang.Object
> bound(s):
> java.lang.Object,net.imglib2.type.numeric.RealType<java.lang.Object>,net.imglib2.type.NativeType<java.lang.Object>
> [INFO] 1 error
> [INFO] -------------------------------------------------------------
> [INFO]
> ------------------------------------------------------------------------
> [ERROR] BUILD FAILURE
> [INFO]
> ------------------------------------------------------------------------
> [INFO] Compilation failure
> AnisotropicDiffusion3DExample.java:[51,32] invalid inferred types for T;
> inferred type does not conform to declared bound(s)
> inferred: java.lang.Object
> bound(s):
> java.lang.Object,net.imglib2.type.numeric.RealType<java.lang.Object>,net.imglib2.type.NativeType<java.lang.Object>
>
> [INFO]
> ------------------------------------------------------------------------
> [INFO] For more information, run Maven with the -e switch
> [INFO]
> ------------------------------------------------------------------------
> [INFO] Total time: 1 minute 33 seconds
> [INFO] Finished at: Tue Apr 03 14:03:28 CDT 2012
> [INFO] Final Memory: 173M/950M
> [INFO]
> ------------------------------------------------------------------------
> Archiving artifacts
> Performance: No threshold configured for making the test unstable
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> TEST-imglib.ops.Rev2FunctionalIdeasTest.xml
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> Performance: Parsing JUnit report file
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> Performance: Parsing JUnit report file
> TEST-script.imglib.test.TestTransformations.xml
> Performance: File TEST-HistogramTest.xml reported 0.0% of errors
> [SUCCESS]. Build status is: FAILURE
> Performance: File TEST-tests.labeling.AllConnectedComponentsTest.xml
> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> errors [SUCCESS]. Build status is: FAILURE
> Performance: File TEST-tests.BasicTest.xml reported 0.0% of errors
> [SUCCESS]. Build status is: FAILURE
> Performance: File TEST-tests.TestSortedGrayLevelIterator.xml reported 0.0%
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> errors [SUCCESS]. Build status is: FAILURE
> Performance: File TEST-SquareTest.xml reported 0.0% of errors [SUCCESS].
> Build status is: FAILURE
> Performance: File TEST-imglib.ops.Rev2FunctionalIdeasTest.xml reported
> 0.0% of errors [SUCCESS]. Build status is: FAILURE
> Performance: File TEST-script.imglib.test.TestPlot.xml reported 0.0% of
> errors [SUCCESS]. Build status is: FAILURE
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> TEST-net.imglib2.algorithm.kdtree.VolumetricSearchTest.xml reported 0.0% of
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> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> TEST-net.imglib2.algorithm.region.localneighborhood.DomainCursorTest.xml
> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> [SUCCESS]. Build status is: FAILURE
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> of errors [SUCCESS]. Build status is: FAILURE
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> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> TEST-net.imglib2.ops.operation.binary.complex.ComplexPowerTest.xml reported
> 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> 0.0% of errors [SUCCESS]. Build status is: FAILURE
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> reported 0.0% of errors [SUCCESS]. Build status is: FAILURE
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>
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