[ImageJ-devel] FW: Next generation imageJ

[Curtis Rueden]

Hi Toby,

Probably I should send this to the mailing list
>

Sure, I am CCing the list.

It looks like they put the wrong classname in the bat file.
>

Thanks for letting me know. The problem was that we were accidentally
linking to an obsolete location of the application build (and hence an older
version). I have updated the downloads page to point to the latest code now,
so the ZIP file should work again out of the box.

I was able to open the blobs file and do thresholding, but I was unable to
> open up  a  jpeg file.
>

Right now, File > Open does not handle color images properly. If you do File
> Import > Bio-Formats you will be able to import the color images as
grayscale with a slider for channel. Note that any menu icon with the ImageJ
microscope item (e.g., File > Open) is an ImageJ 1.x plugin being run in
compatibility mode, while menu icons without it are IJ2 plugins (e.g., File
> Import > Bio-Formats).

We will try to have the color image problem addressed by the April 1st
release of 2.0alpha1.

Regards,
Curtis

On Fri, Mar 11, 2011 at 12:03 PM, Toby Cornish <tcornis3 at jhmi.edu> wrote:

> Curtis,
>
>
>
> We are very excited about developments on the imagejdev.  Probably I should
> send this to the mailing list, but the bat file that comes with the
> pre-alpha doesn’t seem to work without modification (see below)
>
>
>
> Toby
>
>
>
> *From:* James Morgan [mailto:jmorgan at jhmi.edu]
> *Sent:* Friday, March 11, 2011 12:30 PM
> *To:* Toby Cornish; demarzo.angelo at gmail.com
> *Cc:* 'Bora Gurel'; Angelo Demarzo
> *Subject:* RE: Next generation imageJ
>
>
>
> Toby,
>
>
> It looks like they put the wrong classname in the bat file.  Change the
> text in image.bat to say:
> @echo off java -mx512m -cp "jar\*" imagej.gui.swing.MainFrame $@
>
>
>
> This will allow you to at least start the application.  I was able to open
> the blobs file and do thresholding, but I was unable to open up  a  jpeg
> file.   This is even after I updated my jar files to get the latest daily
> build.  But they are a pre-alpha version.  This development looks really
> promising.
>
>
>
> Jim
>
>
>
>
>
> *From:* Toby Cornish [mailto:tcornis3 at jhmi.edu]
> *Sent:* Friday, March 11, 2011 12:08 PM
> *To:* 'demarzo.angelo at gmail.com'
> *Cc:* James Morgan; Bora Gurel; Angelo Demarzo
> *Subject:* RE: Next generation imageJ
>
>
>
> I tried installing and running their pre-alpha, but I got this error.  Jim,
> any thoughts on this error?
>
>
>
> C:\Users\tcornis3\bin\imagejdev>imagej.bat
>
> Exception in thread "main" java.lang.NoClassDefFoundError:
> imagej/gui/MainFrame
>
> Caused by: java.lang.ClassNotFoundException: imagej.gui.MainFrame
>
>         at java.net.URLClassLoader$1.run(Unknown Source)
>
>         at java.security.AccessController.doPrivileged(Native Method)
>
>         at java.net.URLClassLoader.findClass(Unknown Source)
>
>         at java.lang.ClassLoader.loadClass(Unknown Source)
>
>         at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
>
>         at java.lang.ClassLoader.loadClass(Unknown Source)
>
> Could not find the main class: imagej.gui.MainFrame.  Program will exit.
>
>
>
> Toby
>
>
>
> *From:* Angelo De Marzo [mailto:demarzo.angelo at gmail.com]
> *Sent:* Friday, March 11, 2011 12:00 PM
> *To:* Toby Cornish
> *Cc:* James Morgan; Bora Gurel; Angelo Demarzo
> *Subject:* Re: Next generation imageJ
>
>
>
> very cool indeed! thanks
>
> On Thu, Mar 10, 2011 at 3:30 PM, Toby Cornish <tcornis3 at jhmi.edu> wrote:
>
> Looks very promising
>
>
>
> http://imagejdev.org/
>
>
>
> Toby C. Cornish, M.D., Ph.D.
>
> Gastrointestinal and Liver Pathology
>
>
>
> Johns Hopkins University
>
> Department of Pathology
>
> 401 N. Broadway
>
> Weinberg Rm. 2242
>
> Baltimore, MD 21231
>
>
>
> <410-955-3580>410-955-3580 Phone
>
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>
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>
>
>
>
>
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