[ImageJ-devel] CellProfiler 2.0 / ImageJ 2.0

Curtis Rueden ctrueden at wisc.edu
Mon Oct 11 17:31:06 CDT 2010

Hi Lee,

Great, I tested both pipelines and they work like a charm on my Windows XP
system with the build you sent. I took some screenshots and will incorporate
into my talk.


On Thu, Sep 23, 2010 at 1:32 PM, Lee Kamentsky <leek at broadinstitute.org>wrote:

>  OK, I just finished 4 days of hacking to get CellProfiler to read the
> @parameter tags. I also took the plugin that we use the most, "Tubeness",
> and converted it to use the tags and removed its gui code (dialog stuff +
> image display). The result: CellProfiler runs an ImageJ plugin, displaying
> the parameters (including input and output images) as settings in our
> module. In this case, "InputImage", "Sigma", "Use calibration" and "Output
> image" are the parameters. The result appears below, totally seamless.
> Curtis, I'll probably give you two pipelines: one that runs on the current
> CellProfiler release with the old ImageJ and one that is my personal build
> with a bleeding-edge ImageJ 2.0 build. This reinforces the message we want
> to send:
> Your plugin is the manifestation of your method or algorithm which is
> what's important to you.
> Your plugin conforms to the ImageJ 2.0 standard.
> Your method can be used by any software that accepts ImageJ 2.0 plugins.
> How cool.
> --Lee
> [image: ImageJ 2.0 / CellProfiler 2.0]
> _______________________________________________
> ImageJ-devel mailing list
> ImageJ-devel at imagejdev.org
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