[ImageJ-devel] ROIs, both 5D and ND
jason at lifesci.dundee.ac.uk
Mon Apr 19 11:56:58 CDT 2010
[Apologies for the cross-post, but it seemed necessary, and various
people said it was ok]
There have been various discussions about modeling of ROIs for our
respective projects. OME is currently using a 5D (space, time,
channel) ROI spec, which is available here:
This matches the existing spec we use for images as 5D objects. Its
works for most conventional images.
However, we're all fully aware that this doesn't cut it for some very
important use cases. One we are working on right now-- FLIM. There
are obviously many others. In OME parlance, this is the N-dimensional
The Data Modeling work (such as it is) on this is at:
Whatever we do, we'd much prefer to be in synch with concepts within
Fiji, as we will continue to release bridges between OMERO and Fiji,
and doubtless, in good time, will need to include support for ROIs in
Stimulated by a presentation from Curtis Rueden last week, I started
an email thread with Dan White on this topic over the weekend, and it
seems this discussion should be out in the open. Anyone interested in
trying to work out an alignment on this topic? If so, are there Fiji
resources we can stare at and see what you all are thinking?
Thanks in advance.
Wellcome Trust Centre for Gene Regulation & Expression
College of Life Sciences
University of Dundee
Dundee DD1 5EH
phone (01382) 385819
Intl phone: 44 1382 385819
FAX (01382) 388072
email: jason at lifesci.dundee.ac.uk
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Open Microscopy Environment: http://openmicroscopy.org
The University of Dundee is a Scottish Registered Charity, No. SC015096.
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