[ImageJ-builds] Build failed in Jenkins: ImageJ-launcher » maven #1268
jenkins at imagej.net
jenkins at imagej.net
Fri Feb 17 09:43:10 CST 2017
See <http://jenkins.imagej.net/job/ImageJ-launcher/label=maven/1268/changes>
Changes:
[stefan.helfrich] ImageJ.c: properly handle --showUI argument
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[...truncated 4538 lines...]
Setting project property: jetty-server.version -> 9.3.11.v20160721
Setting project property: Interactive_3D_Surface_Plot.version -> 2.4.1
Setting project property: imglib2-ui.version -> 2.0.0-beta-31
Setting project property: slf4j-jcl.version -> 1.7.21
Setting project property: Directionality.version -> 2.0.1
Setting project property: bigwarp.version -> 2.1.3
Setting project property: IO.version -> 3.0.1
Setting project property: batik-gui-util.version -> 1.8
Setting project property: package-name -> net.imagej.launcher
Setting project property: scripting-jython.version -> 0.4.0
Setting project property: sanitizedVersion -> 4.0.6
Setting project property: gson.version -> 2.7
Setting project property: jetty-jaspi.version -> 9.3.11.v20160721
Setting project property: imglib2-algorithm-gpl.version -> 0.1.5
Setting project property: scijava-cache.version -> 0.1.1
Setting project property: rootdir -> /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven
Setting project property: IJ_Robot.version -> 2.0.0
Setting project property: batik-ext.version -> 1.8
Setting project property: CPU_Meter.version -> 2.0.0
Setting project property: ImageJ_3D_Viewer.version -> 4.0.1
Setting project property: jetty-util-ajax.version -> 9.3.11.v20160721
Setting project property: commons-math3.version -> 3.6.1
Setting project property: imagej-plugins-commands.version -> 0.7.0
Setting project property: commons-codec.version -> 1.8
Setting project property: M_I_P.version -> 2.0.0
Setting project property: Dichromacy.version -> 2.1.0
Setting project property: Helmholtz_Analysis.version -> 2.0.1
Setting project property: scijava.jvm.test.version -> 1.6
Setting project property: logback.version -> 1.1.7
Setting project property: nar.arch -> amd64
Setting project property: imageware.version -> 2.0.0
Setting project property: jetty-util.version -> 9.3.11.v20160721
Setting project property: imagej-usage.version -> 0.4.0
Setting project property: jetty-start.version -> 9.3.11.v20160721
Setting project property: SPIM_Registration.version -> 5.0.7
Setting project property: postgresql.version -> 8.2-507.jdbc3
Setting project property: level_sets.version -> 1.0.1
Setting project property: batik-squiggle.version -> 1.8
Setting project property: Arrow.version -> 2.0.1
Setting project property: argLine ->
Setting project property: Auto_Threshold.version -> 1.16.4
Setting project property: jetty-plus.version -> 9.3.11.v20160721
Setting project property: scripting-java.version -> 0.4.0
Setting project property: jetty-rewrite.version -> 9.3.11.v20160721
Setting project property: nar.linker -> gcc
Setting project property: VIB.version -> 3.0.1
Setting project property: java3d.version -> 1.6.0-scijava-2
Setting project property: spim_data.version -> 2.2.0
Setting project property: bigdataviewer_fiji.version -> 3.0.0
Setting project property: slf4j-api.version -> 1.7.21
Setting project property: scripting-jruby.version -> 0.2.4
Setting project property: libdl.name -> dl
Setting project property: scijava-ui-awt.version -> 0.1.5
Setting project property: jgrapht.version -> 0.8.3
Setting project property: QuickPALM.version -> 1.1.1
Setting project property: imagej-plugins-uploader-ssh.version -> 0.3.0
Setting project property: swing-checkbox-tree.version -> 1.0.1
Setting project property: batik-svggen.version -> 1.8
Setting project property: jetty-xml.version -> 9.3.11.v20160721
Setting project property: batik-xml.version -> 1.8
Setting project property: batik-util.version -> 1.8
Setting project property: jna.version -> 4.2.2
Setting project property: Extended_Depth_Field.version -> 2.0.1
Setting project property: pal-optimization.version -> 2.0.0
Setting project property: batik-rasterizer-ext.version -> 1.8
Setting project property: formats-common.version -> 5.2.4
Setting project property: bUnwarpJ.version -> 2.6.3
Setting project property: ToAST.version -> 25.0.1
Setting project property: jogl.version -> 2.3.2
Setting project property: panorama.version -> 3.0.1
Setting project property: skipTests -> true
Setting project property: slf4j-nop.version -> 1.7.21
Setting project property: Linear_Kuwahara.version -> 2.0.0
Setting project property: LSM_Reader.version -> 4.1.1
Setting project property: imagej-ui-swing.version -> 0.21.1
Setting project property: MTrack2.version -> 2.0.0
Setting project property: batik-svg-dom.version -> 1.8
Setting project property: imglib2.version -> 3.2.1
Setting project property: jetty-jsp.version -> 9.3.11.v20160721
Setting project property: imglib2-algorithm.version -> 0.6.1
Setting project property: VIB-lib.version -> 2.1.1
Setting project property: TrackMate.version -> 3.4.2
Setting project property: Gray_Morphology.version -> 2.3.3
Setting project property: scijava.jvm.version -> 1.6
Setting project property: imglib2-ij.version -> 2.0.0-beta-35
Setting project property: jsch.version -> 0.1.49
Setting project property: Trainable_Segmentation.version -> 3.2.2
Setting project property: nar.aol -> amd64-Linux-gcc
Setting project property: rsyntaxtextarea.version -> 2.5.8
Setting project property: scijava-plugins-text-markdown.version -> 0.1.2
Setting project property: Volume_Viewer.version -> 2.01.1
Setting project property: license.projectName -> ImageJ software for multidimensional image processing and analysis.
Setting project property: z_spacing.version -> 1.0.2
Setting project property: nar.os -> Linux
Setting project property: Statistical_Region_Merging.version -> 2.0.0
Setting project property: imagej-launcher.version -> 4.0.5
Setting project property: mines-jtk.version -> 20151125
Setting project property: Graph_Cut.version -> 1.0.1
Setting project property: scijava.groupIds -> org.scijava,net.imagej,net.imglib2,io.scif,sc.fiji
Setting project property: Colour_Deconvolution.version -> 3.0.1
Setting project property: license.copyrightOwners -> Board of Regents of the University of
Wisconsin-Madison, Broad Institute of MIT and Harvard, and Max Planck
Institute of Molecular Cell Biology and Genetics.
Setting project property: imagej-common.version -> 0.24.1
Setting project property: architecture.option -> -m32
Setting project property: jep.version -> 2.4.2
Setting project property: SplineDeformationGenerator.version -> 2.0.0
Setting project property: bio-formats_plugins.version -> 5.2.4
Setting project property: jama.version -> 1.0.3
Setting project property: T2-NIT.version -> 1.1.1
Setting project property: slf4j-ext.version -> 1.7.21
Setting project property: Fiji_Archipelago.version -> 2.0.0
Setting project property: ij.executable.name -> ImageJ-linux32
Setting project property: batik-codec.version -> 1.8
Setting project property: legacy-imglib1.version -> 1.1.5
Setting project property: imagej-updater.version -> 0.8.1
Setting project property: batik-dom.version -> 1.8
Setting project property: Multi_Kymograph.version -> 2.0.0
Setting project property: T2-TreelineGraph.version -> 1.1.1
Setting project property: fiji.version -> 2.0.0
Setting project property: VectorString.version -> 2.0.0
Setting project property: imagej.version -> 2.0.0-rc-55
Setting project property: jetty-security.version -> 9.3.11.v20160721
Setting project property: imglib2-realtransform.version -> 2.0.0-beta-33
Setting project property: imagej-maven-plugin.version -> 0.6.0
Setting project property: stack.protector.option -> -fno-stack-protector
Setting project property: Fiji_Package_Maker.version -> 2.1.0
Setting project property: Video_Editing.version -> 2.0.0
Setting project property: Reconstruct_Reader.version -> 2.0.2
Setting project property: imagej-scripting.version -> 0.4.0
Setting project property: scmBranch -> UNKNOWN
Setting project property: formats-gpl.version -> 5.2.4
Setting project property: scijava.team.roles -> founder,lead,developer,debugger,reviewer,support,maintainer
Setting project property: batik-ttf2svg.version -> 1.8
Setting project property: jai-core.version -> 1.1.3
Setting project property: Cell_Counter.version -> 2.2.1
Setting project property: scripting-scala.version -> 0.1.0
Setting project property: jetty-proxy.version -> 9.3.11.v20160721
Setting project property: scijava-plugins-platforms.version -> 0.2.0
Setting project property: KymographBuilder.version -> 1.2.4
Setting project property: AnalyzeSkeleton.version -> 3.1.1
Setting project property: fiji-lib.version -> 2.1.1
Setting project property: jetty-io.version -> 9.3.11.v20160721
Setting project property: opencsv.version -> 2.4
Setting project property: Time_Lapse.version -> 2.0.1
Setting project property: Vaa3d_Writer.version -> 1.0.1
Setting project property: ImageJ_3D_Objects_Counter.version -> 2.0.0
Setting project property: Siox_Segmentation.version -> 1.0.4
Setting project property: fiji-compat.version -> 2.0.2
Setting project property: formats-bsd.version -> 5.2.4
Setting project property: argLineDebug ->
Setting project property: imagej-legacy.version -> 0.23.3
Setting project property: ant.file -> /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/pom.xml
[DEBUG] Setting properties with prefix:
Setting project property: project.groupId -> net.imagej
Setting project property: project.artifactId -> imagej-launcher
Setting project property: project.name -> ImageJ Launcher
Setting project property: project.description -> The executable which runs ImageJ. Its purpose is also to make sure that updates downloaded by the ImageJ Updater will be put into place before starting the Java Virtual Machine. It was formerly known as the Fiji launcher.
Setting project property: project.version -> 4.0.6-SNAPSHOT
Setting project property: project.packaging -> nar
Setting project property: project.build.directory -> /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/target
Setting project property: project.build.outputDirectory -> /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/target/classes
Setting project property: project.build.testOutputDirectory -> /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/target/test-classes
Setting project property: project.build.sourceDirectory -> /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/src/main/java
Setting project property: project.build.testSourceDirectory -> /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/src/test/java
Setting project property: localRepository -> id: local
url: file:///var/lib/jenkins-maven/.m2/repository/
layout: none
Setting project property: settings.localRepository -> /var/lib/jenkins-maven/.m2/repository
Setting project property: org.scijava:scijava-common:jar -> /var/lib/jenkins-maven/.m2/repository/org/scijava/scijava-common/2.61.0/scijava-common-2.61.0.jar
Setting project property: org.scijava:scijava-expression-parser:jar -> /var/lib/jenkins-maven/.m2/repository/org/scijava/scijava-expression-parser/3.1.0/scijava-expression-parser-3.1.0.jar
Setting project property: com.googlecode.gentyref:gentyref:jar -> /var/lib/jenkins-maven/.m2/repository/com/googlecode/gentyref/gentyref/1.1.0/gentyref-1.1.0.jar
Setting project property: org.bushe:eventbus:jar -> /var/lib/jenkins-maven/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar
Setting project property: maven.project.dependencies.versions -> 2.61.0:3.1.0:1.1.0:1.4:
Setting project property: maven.dependency.org.scijava.scijava-common.jar.path -> /var/lib/jenkins-maven/.m2/repository/org/scijava/scijava-common/2.61.0/scijava-common-2.61.0.jar
Setting project property: maven.dependency.org.scijava.scijava-expression-parser.jar.path -> /var/lib/jenkins-maven/.m2/repository/org/scijava/scijava-expression-parser/3.1.0/scijava-expression-parser-3.1.0.jar
Setting project property: maven.dependency.com.googlecode.gentyref.gentyref.jar.path -> /var/lib/jenkins-maven/.m2/repository/com/googlecode/gentyref/gentyref/1.1.0/gentyref-1.1.0.jar
Setting project property: maven.dependency.org.bushe.eventbus.jar.path -> /var/lib/jenkins-maven/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar
[INFO] Executing tasks
Build sequence for target(s) `main' is [main]
Complete build sequence is [main, ]
main:
fileset: Setup scanner in dir /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/target/nar with patternSet{ includes: [**/*/bin/i386-*/imagej-launcher*] excludes: [] }
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Skipping ImageJ Launcher
[INFO] This project has been banned from the build due to previous failures.
[INFO] ------------------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 11.967s
[INFO] Finished at: Fri Feb 17 09:43:10 CST 2017
[INFO] Final Memory: 33M/594M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.8:run (copy) on project imagej-launcher: An Ant BuildException has occured: Cannot perform operation from directory to file.
[ERROR] around Ant part ...<copy tofile="/data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/target/ImageJ-linux32">... @ 4:104 in /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/target/antrun/build-main.xml
[ERROR] -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.8:run (copy) on project imagej-launcher: An Ant BuildException has occured: Cannot perform operation from directory to file.
around Ant part ...<copy tofile="/data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/target/ImageJ-linux32">... @ 4:104 in /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/target/antrun/build-main.xml
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:141)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:409)
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:352)
Caused by: org.apache.maven.plugin.MojoExecutionException: An Ant BuildException has occured: Cannot perform operation from directory to file.
around Ant part ...<copy tofile="/data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/target/ImageJ-linux32">... @ 4:104 in /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/target/antrun/build-main.xml
at org.apache.maven.plugin.antrun.AntRunMojo.execute(AntRunMojo.java:342)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
... 19 more
Caused by: /data/devel/jenkins-maven/workspace/ImageJ-launcher/label/maven/target/antrun/build-main.xml:4: Cannot perform operation from directory to file.
at org.apache.tools.ant.taskdefs.Copy.validateAttributes(Copy.java:697)
at org.apache.tools.ant.taskdefs.Copy.execute(Copy.java:442)
at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
at org.apache.tools.ant.Task.perform(Task.java:348)
at org.apache.tools.ant.Target.execute(Target.java:435)
at org.apache.tools.ant.Target.performTasks(Target.java:456)
at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1393)
at org.apache.tools.ant.Project.executeTarget(Project.java:1364)
at org.apache.maven.plugin.antrun.AntRunMojo.execute(AntRunMojo.java:313)
... 21 more
[ERROR]
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
Build step 'Execute shell' marked build as failure
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