[ImageJ-builds] Build failed in Jenkins: Simple_Neurite_Tracer #42

Sat Oct 22 23:26:49 CDT 2016

See <http://jenkins.imagej.net/job/Simple_Neurite_Tracer/42/changes>

Changes:

[tiagoalvespedrosa] POM: bump parent to pom-fiji 26.1.1

[tiagoalvespedrosa] POM: Add Sholl_Analaysis as a dependency

[tiagoalvespedrosa] Make continuous and non-continuous profiles uniform As is continuous

[tiagoalvespedrosa] Do not allow duplicated points in plot of sample profile

[tiagoalvespedrosa] Make export data coherent with the one graphed.

[tiagoalvespedrosa] Maintain naming style and ensure label is disable if no data present

[tiagoalvespedrosa] Predict llegalArgumentException when minY=maxY

[tiagoalvespedrosa] Add ResultsMethods to perform analysis through Sholl Analysis plugin

[tiagoalvespedrosa] Keep track of "Save to" directory

[tiagoalvespedrosa] Remove redundancy: Export only detailed profiled. Summary results will

[tiagoalvespedrosa] Analyze data through sholl.Shol_Analysis on a separated thread

[tiagoalvespedrosa] GUI cleanup

[tiagoalvespedrosa] Code cleanup using github.com/imagej/imagej/tree/master/config

[tiagoalvespedrosa] Add public methods for sampled data

[tiagoalvespedrosa] Try to solve circular dependencies error

[tiagoalvespedrosa] Require Sholl_Analysis 3.6.7

------------------------------------------
Started by an SCM change
Building remotely on maven in workspace <http://jenkins.imagej.net/job/Simple_Neurite_Tracer/ws/>
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url git://github.com/fiji/Simple_Neurite_Tracer # timeout=10
Fetching upstream changes from git://github.com/fiji/Simple_Neurite_Tracer
 > git --version # timeout=10
 > git -c core.askpass=true fetch --tags --progress git://github.com/fiji/Simple_Neurite_Tracer +refs/heads/*:refs/remotes/origin/*
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 4e0185f46c5009d0db978225bebc0063e6036a32 (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 4e0185f46c5009d0db978225bebc0063e6036a32
 > git rev-list 6fec7a80af64ddbc60927ee3f50188017119b142 # timeout=10
 > git tag -a -f -m Jenkins Build #42 jenkins-Simple_Neurite_Tracer-42 # timeout=10
[Simple_Neurite_Tracer] $ /bin/sh -xe /tmp/hudson1554649230109150998.sh
+ git clean -dfx
[Simple_Neurite_Tracer] $ /bin/sh -xe /tmp/hudson1138451647121734485.sh
+ mvn -U -Pdeploy-to-imagej clean deploy
[INFO] Scanning for projects...
[WARNING] 
[WARNING] Some problems were encountered while building the effective model for sc.fiji:Simple_Neurite_Tracer:jar:3.0.5-SNAPSHOT
[WARNING] 'dependencies.dependency.exclusions.exclusion.groupId' for ca.mcgill:Sholl_Analysis:jar with value '*' does not match a valid id pattern. @ line 149, column 15
[WARNING] 'dependencies.dependency.exclusions.exclusion.artifactId' for ca.mcgill:Sholl_Analysis:jar with value '*' does not match a valid id pattern. @ line 150, column 18
[WARNING] 
[WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
[WARNING] 
[WARNING] For this reason, future Maven versions might no longer support building such malformed projects.
[WARNING] 
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/Simple_Neurite_Tracer.jar 3.0.5-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.0.0:clean (default-clean) @ Simple_Neurite_Tracer ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-rules) @ Simple_Neurite_Tracer ---
[INFO] 
[INFO] --- build-helper-maven-plugin:1.12:regex-property (sanitize-version) @ Simple_Neurite_Tracer ---
[INFO] 
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ Simple_Neurite_Tracer ---
[INFO] Executing: /bin/sh -c cd '/data/devel/jenkins-maven/workspace/Simple_Neurite_Tracer' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /data/devel/jenkins-maven/workspace/Simple_Neurite_Tracer
[INFO] Storing buildNumber: 4e0185f46c5009d0db978225bebc0063e6036a32 at timestamp: 1477196807195
[WARNING] Cannot get the branch information from the git repository: 
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref

[INFO] Executing: /bin/sh -c cd '/data/devel/jenkins-maven/workspace/Simple_Neurite_Tracer' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /data/devel/jenkins-maven/workspace/Simple_Neurite_Tracer
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] 
[INFO] --- scijava-maven-plugin:0.5.1:set-rootdir (set-rootdir) @ Simple_Neurite_Tracer ---
[INFO] Setting rootdir: /data/devel/jenkins-maven/workspace/Simple_Neurite_Tracer
[INFO] 
[INFO] --- maven-resources-plugin:3.0.1:resources (default-resources) @ Simple_Neurite_Tracer ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.5.1:compile (default-compile) @ Simple_Neurite_Tracer ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 55 source files to /data/devel/jenkins-maven/workspace/Simple_Neurite_Tracer/target/classes
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 16.085s
[INFO] Finished at: Sat Oct 22 23:26:48 CDT 2016
[INFO] Final Memory: 61M/459M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.5.1:compile (default-compile) on project Simple_Neurite_Tracer: Fatal error compiling: invalid target release: 1.8 -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
Build step 'Execute shell' marked build as failure
Archiving artifacts