[ImageJ-builds] Build failed in Jenkins: BAR #38

jenkins at imagej.net jenkins at imagej.net
Mon Nov 21 14:36:03 CST 2016


See <http://jenkins.imagej.net/job/BAR/38/changes>

Changes:

[tiagoalvespedrosa] Jarify Analysis scrips

[tiagoalvespedrosa] Jarify Annotation scripts

[tiagoalvespedrosa] Jarify Segmentation scripts

[tiagoalvespedrosa] Allow ROI-constrained detection

[tiagoalvespedrosa] Allow overlay to be reused without resetting it

[tiagoalvespedrosa] Fix bogus typo

[tiagoalvespedrosa] Implement proper error messages

[tiagoalvespedrosa] Get rid of superfluous @Dataset usage and awkward log function

[tiagoalvespedrosa] Polish code - Allow 3D analysis - Allow detection to be restricted by

[tiagoalvespedrosa] Polish prompt and file header

[tiagoalvespedrosa] Avoid AttributeError

[tiagoalvespedrosa] Add parameters for target channels, and allow analysis of grayscale

[tiagoalvespedrosa] Fix index out of bounds

[tiagoalvespedrosa] Allow time-lapses as input

[tiagoalvespedrosa] Allow results to still be logged when the same channel is chosen twice

[tiagoalvespedrosa] More prompt polishing

[tiagoalvespedrosa] Work around mysterious UnboundLocalError

[tiagoalvespedrosa] Fix anchors in Help URLs

[tiagoalvespedrosa] Output results to a dedicated table

[tiagoalvespedrosa] Update URLs in nav bar

[tiagoalvespedrosa] Update URLs in documentation resources

[tiagoalvespedrosa] Ignore PyDev configuration files

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[INFO] --- build-helper-maven-plugin:1.12:regex-property (sanitize-version) @ BAR_ ---
[INFO] 
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ BAR_ ---
[INFO] Executing: /bin/sh -c cd '/data/devel/jenkins-maven/workspace/BAR/BAR' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /data/devel/jenkins-maven/workspace/BAR/BAR
[INFO] Storing buildNumber: 422b8e706df26948f7a0a78fce2d6b8f8748335d at timestamp: 1479760553585
[WARNING] Cannot get the branch information from the git repository: 
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref

[INFO] Executing: /bin/sh -c cd '/data/devel/jenkins-maven/workspace/BAR/BAR' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /data/devel/jenkins-maven/workspace/BAR/BAR
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] 
[INFO] --- scijava-maven-plugin:0.5.1:set-rootdir (set-rootdir) @ BAR_ ---
[INFO] Setting rootdir: /data/devel/jenkins-maven/workspace/BAR/BAR
[INFO] 
[INFO] --- maven-resources-plugin:3.0.1:resources (default-resources) @ BAR_ ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 23 resources
[INFO] Copying 11 resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.5.1:compile (default-compile) @ BAR_ ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 11 source files to /data/devel/jenkins-maven/workspace/BAR/BAR/target/classes
[INFO] 
[INFO] --- maven-resources-plugin:3.0.1:testResources (default-testResources) @ BAR_ ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins-maven/workspace/BAR/BAR/src/test/resources
[INFO] skip non existing resourceDirectory /data/devel/jenkins-maven/workspace/BAR/BAR/src/test/java
[INFO] 
[INFO] --- maven-compiler-plugin:3.5.1:testCompile (default-testCompile) @ BAR_ ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.19.1:test (default-test) @ BAR_ ---
[INFO] No tests to run.
[INFO] 
[INFO] --- maven-jar-plugin:2.6:jar (default-jar) @ BAR_ ---
[INFO] Building jar: /data/devel/jenkins-maven/workspace/BAR/BAR/target/BAR_-1.1.10.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (default) @ BAR_ ---
[INFO] Building jar: /data/devel/jenkins-maven/workspace/BAR/BAR/target/BAR_-1.1.10-sources.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ BAR_ ---
[INFO] Building jar: /data/devel/jenkins-maven/workspace/BAR/BAR/target/BAR_-1.1.10-sources.jar
[WARNING] Artifact com.github.tferr:BAR_:java-source:sources:1.1.10 already attached to project, ignoring duplicate
[INFO] 
[INFO] --- maven-javadoc-plugin:2.10.3:jar (attach-javadocs) @ BAR_ ---
[INFO] 
Loading source files for package bar...
Loading source files for package bar.plugin...
Constructing Javadoc information...
Standard Doclet version 1.8.0_91
Building tree for all the packages and classes...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/BAR.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/BAR.GCD.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/BARService.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/DefaultGCD.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/FileDrop.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/FileDrop.Event.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/FileDrop.Listener.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/FileDrop.TransferableObject.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/FileDrop.TransferableObject.Fetcher.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/PlotUtils.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/Utils.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/plugin/Commander.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/plugin/Help.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/plugin/InteractivePlotter.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/plugin/ShenCastan.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/plugin/SnippetCreator.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/overview-frame.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/package-frame.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/package-summary.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/package-tree.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/plugin/package-frame.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/plugin/package-summary.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/bar/plugin/package-tree.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/constant-values.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/serialized-form.html...
Building index for all the packages and classes...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/overview-tree.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/index-all.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/allclasses-frame.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/allclasses-noframe.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/index.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/overview-summary.html...
Generating /data/devel/jenkins-maven/workspace/BAR/BAR/target/apidocs/help-doc.html...
[INFO] Building jar: /data/devel/jenkins-maven/workspace/BAR/BAR/target/BAR_-1.1.10-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:2.6:test-jar (default) @ BAR_ ---
[INFO] Skipping packaging of the test-jar
[INFO] 
[INFO] --- maven-install-plugin:2.5.2:install (default-install) @ BAR_ ---
[INFO] Installing /data/devel/jenkins-maven/workspace/BAR/BAR/target/BAR_-1.1.10.jar to /var/lib/jenkins-maven/.m2/repository/com/github/tferr/BAR_/1.1.10/BAR_-1.1.10.jar
[INFO] Installing /data/devel/jenkins-maven/workspace/BAR/BAR/pom.xml to /var/lib/jenkins-maven/.m2/repository/com/github/tferr/BAR_/1.1.10/BAR_-1.1.10.pom
[INFO] Installing /data/devel/jenkins-maven/workspace/BAR/BAR/target/BAR_-1.1.10-sources.jar to /var/lib/jenkins-maven/.m2/repository/com/github/tferr/BAR_/1.1.10/BAR_-1.1.10-sources.jar
[INFO] Installing /data/devel/jenkins-maven/workspace/BAR/BAR/target/BAR_-1.1.10-javadoc.jar to /var/lib/jenkins-maven/.m2/repository/com/github/tferr/BAR_/1.1.10/BAR_-1.1.10-javadoc.jar
[INFO] 
[INFO] --- imagej-maven-plugin:0.6.0:copy-jars (copy-jars) @ BAR_ ---
[INFO] Property 'imagej.app.directory' unset; Skipping copy-jars
[INFO] 
[INFO] --- maven-deploy-plugin:2.8.2:deploy (default-deploy) @ BAR_ ---
Uploading: dav:http://maven.imagej.net/content/repositories/releases/com/github/tferr/BAR_/1.1.10/BAR_-1.1.10.jar
Nov 21, 2016 2:36:03 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
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Nov 21, 2016 2:36:03 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
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Uploading: http://maven.imagej.net/content/repositories/releases/com/github/tferr/BAR_/1.1.10/BAR_-1.1.10.pom
Nov 21, 2016 2:36:03 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
4/4 KB       
Nov 21, 2016 2:36:03 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
8/4 KB   
         
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 15.593s
[INFO] Finished at: Mon Nov 21 14:36:03 CST 2016
[INFO] Final Memory: 39M/536M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-deploy-plugin:2.8.2:deploy (default-deploy) on project BAR_: Failed to deploy artifacts: Could not transfer artifact com.github.tferr:BAR_:jar:1.1.10 from/to imagej.releases (dav:http://maven.imagej.net/content/repositories/releases): Failed to transfer file: http://maven.imagej.net/content/repositories/releases/com/github/tferr/BAR_/1.1.10/BAR_-1.1.10.jar. Return code is: 400 -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
Build step 'Execute shell' marked build as failure
Archiving artifacts



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