[ImageJ-builds] Build failed in Jenkins: TrackMate #202
jenkins at imagej.net
jenkins at imagej.net
Wed Mar 23 16:17:05 CDT 2016
See <http://jenkins.imagej.net/job/TrackMate/202/changes>
Changes:
[Jean-Yves Tinevez] The InfoPane in TrackScheme can be collapsed to size 0.
[Jean-Yves Tinevez] Don't change frame when changing the size of a spot below minimal size.
[Jean-Yves Tinevez] Create a logger that echoes everything to the IJ toolbar.
[Jean-Yves Tinevez] Be verbose when editing the model.
[Jean-Yves Tinevez] Fix bulk copy of spots from one frame to the next.
[Jean-Yves Tinevez] Implement step-wise time browsing, 'a la MaMuT'.
------------------------------------------
Started by an SCM change
Building remotely on maven in workspace <http://jenkins.imagej.net/job/TrackMate/ws/>
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url git://github.com/fiji/TrackMate # timeout=10
Fetching upstream changes from git://github.com/fiji/TrackMate
> git --version # timeout=10
> git -c core.askpass=true fetch --tags --progress git://github.com/fiji/TrackMate +refs/heads/*:refs/remotes/origin/*
> git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 5f0d994f42b09ffbd9caf3e57763a356e578bbd6 (origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 5f0d994f42b09ffbd9caf3e57763a356e578bbd6
> git rev-list 05552f52abb6d077da107a28cc67be2e1946553f # timeout=10
> git tag -a -f -m Jenkins Build #202 jenkins-TrackMate-202 # timeout=10
[TrackMate] $ /bin/sh -xe /tmp/hudson7979299657814439634.sh
+ git clean -dfx
Removing target/
[TrackMate] $ /bin/sh -xe /tmp/hudson8447172833600641024.sh
+ mvn -U -Pdeploy-to-imagej clean deploy
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=256m; support was removed in 8.0
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/TrackMate_.jar 3.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ TrackMate_ ---
[INFO]
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-rules) @ TrackMate_ ---
Downloading: http://maven.imagej.net/content/groups/public/com/sun/tools/1.4.2/tools-1.4.2.pom
Downloading: http://repo.maven.apache.org/maven2/com/sun/tools/1.4.2/tools-1.4.2.pom
[INFO] Adding ignorable dependency: null:jcodings:null
[INFO] Adding ignore: org/jcodings/*
[INFO] Adding ignorable dependency: null:jnr-constants:null
[INFO] Adding ignore: com/kenai/constantine/*
[INFO] Adding ignore: jnr/constants/*
[INFO] Adding ignorable dependency: null:jnr-ffi:null
[INFO] Adding ignore: jnr/ffi/*
[INFO] Adding ignorable dependency: null:joda-time:null
[INFO] Adding ignore: *
[INFO] Adding ignorable dependency: null:slf4j-log4j12:null
[INFO] Adding ignore: org/slf4j/impl/*
[INFO] Adding ignorable dependency: batik:batik:null
[INFO] Adding ignore: *
[INFO] Adding ignorable dependency: jama:jama:null
[INFO] Adding ignore: Jama/*
[INFO] Adding ignorable dependency: com.sun:tools:null
[INFO] Adding ignore: *
[INFO]
[INFO] --- build-helper-maven-plugin:1.9.1:regex-property (sanitize-version) @ TrackMate_ ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ TrackMate_ ---
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins-maven/workspace/TrackMate && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins-maven/workspace/TrackMate
[INFO] Storing buildNumber: 5f0d994f42b09ffbd9caf3e57763a356e578bbd6 at timestamp: 1458767817388
[WARNING] Cannot get the branch information from the git repository:
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins-maven/workspace/TrackMate && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins-maven/workspace/TrackMate
[INFO] Storing buildScmBranch: UNKNOWN
[INFO]
[INFO] --- scijava-maven-plugin:0.5.1:set-rootdir (set-rootdir) @ TrackMate_ ---
[INFO] Setting rootdir: /data/devel/jenkins-maven/workspace/TrackMate
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ TrackMate_ ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 63 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ TrackMate_ ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 295 source files to /data/devel/jenkins-maven/workspace/TrackMate/target/classes
[WARNING] /data/devel/jenkins-maven/workspace/TrackMate/src/main/java/fiji/plugin/trackmate/features/spot/SpotContrastAnalyzerFactory.java: Some input files use or override a deprecated API.
[WARNING] /data/devel/jenkins-maven/workspace/TrackMate/src/main/java/fiji/plugin/trackmate/features/spot/SpotContrastAnalyzerFactory.java: Recompile with -Xlint:deprecation for details.
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ TrackMate_ ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins-maven/workspace/TrackMate/src/test/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ TrackMate_ ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 56 source files to /data/devel/jenkins-maven/workspace/TrackMate/target/test-classes
[INFO]
[INFO] --- maven-surefire-plugin:2.17:test (default-test) @ TrackMate_ ---
[INFO] Surefire report directory: /data/devel/jenkins-maven/workspace/TrackMate/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running fiji.plugin.trackmate.features.track.TrackDurationAnalyzerTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.206 sec - in fiji.plugin.trackmate.features.track.TrackDurationAnalyzerTest
Running fiji.plugin.trackmate.features.track.TrackLocationAnalyzerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec - in fiji.plugin.trackmate.features.track.TrackLocationAnalyzerTest
Running fiji.plugin.trackmate.features.track.TrackBranchingAnalyzerTest
[43]
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 sec - in fiji.plugin.trackmate.features.track.TrackBranchingAnalyzerTest
Running fiji.plugin.trackmate.features.track.TrackSpeedStatisticsAnalyzerTest
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec - in fiji.plugin.trackmate.features.track.TrackSpeedStatisticsAnalyzerTest
Running fiji.plugin.trackmate.features.track.TrackIndexAnalyzerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec - in fiji.plugin.trackmate.features.track.TrackIndexAnalyzerTest
Running fiji.plugin.trackmate.features.spot.RadiusEstimatorTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.335 sec - in fiji.plugin.trackmate.features.spot.RadiusEstimatorTest
Running fiji.plugin.trackmate.features.spot.BlobDescriptiveStatisticsTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec - in fiji.plugin.trackmate.features.spot.BlobDescriptiveStatisticsTest
Running fiji.plugin.trackmate.features.edge.EdgeTimeAndLocationAnalyzerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.024 sec - in fiji.plugin.trackmate.features.edge.EdgeTimeAndLocationAnalyzerTest
Running fiji.plugin.trackmate.features.edge.EdgeTargetAnalyzerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 sec - in fiji.plugin.trackmate.features.edge.EdgeTargetAnalyzerTest
Running fiji.plugin.trackmate.features.edge.EdgeVelocityAnalyzerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 sec - in fiji.plugin.trackmate.features.edge.EdgeVelocityAnalyzerTest
Running fiji.plugin.trackmate.ModelTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec - in fiji.plugin.trackmate.ModelTest
Running fiji.plugin.trackmate.SpotCollectionTest
Tests run: 17, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.202 sec <<< FAILURE! - in fiji.plugin.trackmate.SpotCollectionTest
testRemove(fiji.plugin.trackmate.SpotCollectionTest) Time elapsed: 0.009 sec <<< FAILURE!
java.lang.AssertionError: The target spot null could not be removed from target frame 83.
at org.junit.Assert.fail(Assert.java:88)
at org.junit.Assert.assertTrue(Assert.java:41)
at fiji.plugin.trackmate.SpotCollectionTest.testRemove(SpotCollectionTest.java:117)
Running fiji.plugin.trackmate.TrackModelTest
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec - in fiji.plugin.trackmate.TrackModelTest
Running fiji.plugin.trackmate.tracking.oldlap.LAPTrackerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.037 sec - in fiji.plugin.trackmate.tracking.oldlap.LAPTrackerTest
Running fiji.plugin.trackmate.tracking.oldlap.hungarian.MunkresKuhnTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec - in fiji.plugin.trackmate.tracking.oldlap.hungarian.MunkresKuhnTest
Running fiji.plugin.trackmate.tracking.oldlap.hungarian.JonkerVolgenantTest
Munkres-Kuhn: 128ms, Jonker-Volgenant: 55ms
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.185 sec - in fiji.plugin.trackmate.tracking.oldlap.hungarian.JonkerVolgenantTest
Running fiji.plugin.trackmate.tracking.sparselap.linker.LAPJVTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.035 sec - in fiji.plugin.trackmate.tracking.sparselap.linker.LAPJVTest
Running fiji.plugin.trackmate.tracking.sparselap.linker.SparseCostMatrixTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec - in fiji.plugin.trackmate.tracking.sparselap.linker.SparseCostMatrixTest
Running fiji.plugin.trackmate.graph.RecursiveCumSumTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec - in fiji.plugin.trackmate.graph.RecursiveCumSumTest
Running fiji.plugin.trackmate.graph.SortedDepthFirstIteratorTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 sec - in fiji.plugin.trackmate.graph.SortedDepthFirstIteratorTest
Running fiji.plugin.trackmate.graph.ConvexBranchesDecompositionTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.103 sec - in fiji.plugin.trackmate.graph.ConvexBranchesDecompositionTest
Results :
Failed tests:
SpotCollectionTest.testRemove:117 The target spot null could not be removed from target frame 83.
Tests run: 66, Failures: 1, Errors: 0, Skipped: 0
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 12.613s
[INFO] Finished at: Wed Mar 23 16:17:05 CDT 2016
[INFO] Final Memory: 33M/429M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.17:test (default-test) on project TrackMate_: There are test failures.
[ERROR]
[ERROR] Please refer to /data/devel/jenkins-maven/workspace/TrackMate/target/surefire-reports for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Build step 'Execute shell' marked build as failure
Archiving artifacts
More information about the ImageJ-builds
mailing list